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pol RNA polymerase [ Pseudomonas phage phi6 ]

Gene ID: 956436, updated on 18-Aug-2023
Gene symbol
pol
Gene description
RNA polymerase
Locus tag
phi-6L_2
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pseudomonas phage phi6 (nat-host: Pseudomonas syringae pv. phaseolicola)
Lineage
Viruses; Riboviria; Orthornavirae; Duplornaviricota; Vidaverviricetes; Mindivirales; Cystoviridae; Cystovirus
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Location:
segment: L
Sequence:
NC_003715.1 (943..2940)

NC_003715.1Genomic Context describing neighboring genes Neighboring gene prohead Neighboring gene terminase Neighboring gene prohead

Genomic Sequence:
NC_003715.1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Dual Role of a Viral Polymerase in Viral Genome Replication and Particle Self-Assembly. Sun X, et al. mBio, 2018 Oct 2. PMID 30279282, Free PMC Article
  2. The template specificity of bacteriophage Phi6 RNA polymerase. Qiao J, et al. J Virol, 2013 Sep. PMID 23864621, Free PMC Article
  3. The C-terminal priming domain is strongly associated with the main body of bacteriophage ϕ6 RNA-dependent RNA polymerase. Sarin LP, et al. Virology, 2012 Oct 10. PMID 22770923
  4. Noncatalytic ions direct the RNA-dependent RNA polymerase of bacterial double-stranded RNA virus ϕ6 from de novo initiation to elongation. Wright S, et al. J Virol, 2012 Mar. PMID 22205747, Free PMC Article
  5. Packaging accessory protein P7 and polymerase P2 have mutually occluding binding sites inside the bacteriophage 6 procapsid. Nemecek D, et al. J Virol, 2012 Nov. PMID 22896624, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The authors demonstrated that Pseudomonas virus phi6 RNA dependent RNA polymerase accelerates the polymerase complex self-assembly process and contributes to its conformational stability and integrity.
    Title: Dual Role of a Viral Polymerase in Viral Genome Replication and Particle Self-Assembly.
  2. Purified polymerase P2 is able to transcribe dsRNA, but transcription behavior of bacteriophage Phi6 RNA segment L by both wild-type and mutant polymerases is different from that seen in capsid structures.
    Title: The template specificity of bacteriophage Phi6 RNA polymerase.
  3. Packaging accessory protein P7 and polymerase P2 have mutually occluding binding sites inside the bacteriophage 6 procapsid.
    Title: Packaging accessory protein P7 and polymerase P2 have mutually occluding binding sites inside the bacteriophage 6 procapsid.
  4. The structurally flexible hinge region appeared to be involved in the control of priming platform movement.
    Title: The C-terminal priming domain is strongly associated with the main body of bacteriophage ϕ6 RNA-dependent RNA polymerase.
  5. Divalent cations modulate the structural dynamics of phi6 RNA-dependent RNA polymerase.
    Title: Noncatalytic ions direct the RNA-dependent RNA polymerase of bacterial double-stranded RNA virus ϕ6 from de novo initiation to elongation.
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Preferred Names
RNA polymerase
NP_620346.1
  • Carries out transcription and genome replication inside a large icosahedral complex formed with 4 other viral proteins (inner core). However, purified P2 protein is active. Accepts single and double-stranded RNA as templates and is capable of de novo initiation. Structurally related to Hepatitis C virus RdRP. other names: P2.

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003715.1 Reference assembly

    Range
    943..2940
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_620346.1 RNA polymerase [Pseudomonas phage phi6]

    See identical proteins and their annotated locations for NP_620346.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P11124
    UniProtKB/TrEMBL
    Q283T9
    Conserved Domains (1) summary
    PHA00497
    Location:1 → 665
    pol; RNA-dependent RNA polymerase
Nucleotide Protein
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