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CHD1L chromodomain helicase DNA binding protein 1 like [ Homo sapiens (human) ]

Gene ID: 9557, updated on 10-Dec-2017
Official Symbol
CHD1Lprovided by HGNC
Official Full Name
chromodomain helicase DNA binding protein 1 likeprovided by HGNC
Primary source
HGNC:HGNC:1916
See related
Ensembl:ENSG00000131778 MIM:613039; Vega:OTTHUMG00000150271
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ALC1; CHDL
Summary
This gene encodes a DNA helicase protein involved in DNA repair. The protein converts ATP to add poly(ADP-ribose) as it regulates chromatin relaxation following DNA damage. Overexpression of this gene has been linked to several types of cancers. [provided by RefSeq, Feb 2017]
Expression
Ubiquitous expression in testis (RPKM 13.4), bone marrow (RPKM 10.4) and 25 other tissues See more
Orthologs
Location:
1q21.1
Exon count:
26
Annotation release Status Assembly Chr Location
108 current GRCh38.p7 (GCF_000001405.33) 1 NC_000001.11 (147172804..147295766)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (146714291..146767447)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene NBPF member 13, pseudogene Neighboring gene protein kinase AMP-activated non-catalytic subunit beta 2 Neighboring gene protein disulfide isomerase family A member 3 pseudogene 1 Neighboring gene flavin containing monooxygenase 5 Neighboring gene chaperonin containing TCP1 subunit 8 pseudogene 1 Neighboring gene ribosomal protein L7a pseudogene 15 Neighboring gene prostaglandin reductase 1 pseudogene Neighboring gene long intergenic non-protein coding RNA 624 Neighboring gene olfactory receptor family 13 subfamily Z member 1 pseudogene

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

NHGRI GWAS Catalog

Description
A genome-wide association study identifies protein quantitative trait loci (pQTLs).
NHGRI GWA Catalog
A genome-wide association study in the genetic analysis of idiopathic thrombophilia project suggests sex-specific regulation of mitochondrial DNA levels.
NHGRI GWA Catalog
  • DNA Repair, organism-specific biosystem (from REACTOME)
    DNA Repair, organism-specific biosystemDNA repair is a phenomenal multi-enzyme, multi-pathway system required to ensure the integrity of the cellular genome. Living organisms are constantly exposed to harmful metabolic by-products, enviro...
  • Dual Incision in GG-NER, organism-specific biosystem (from REACTOME)
    Dual Incision in GG-NER, organism-specific biosystemDouble incision at the damaged DNA strand excises the oligonucleotide that contains the lesion from the open bubble. The excised oligonucleotide is ~27-30 bases long. Incision 5' to the damage site, ...
  • Formation of Incision Complex in GG-NER, organism-specific biosystem (from REACTOME)
    Formation of Incision Complex in GG-NER, organism-specific biosystemAfter the XPC complex and the UV-DDB complex bind damaged DNA, a basal transcription factor TFIIH is recruited to the nucleotide excision repair (NER) site (Volker et al. 2001, Riedl et al. 2003). DN...
  • Global Genome Nucleotide Excision Repair (GG-NER), organism-specific biosystem (from REACTOME)
    Global Genome Nucleotide Excision Repair (GG-NER), organism-specific biosystemThe DNA damage in GG-NER is recognized by the joint action of two protein complexes. The first complex is composed of XPC, RAD23A or RAD23B and CETN2. The second complex, known as the UV-DDB complex,...
  • Nucleotide Excision Repair, organism-specific biosystem (from REACTOME)
    Nucleotide Excision Repair, organism-specific biosystemNucleotide excision repair (NER) was first described in the model organism E. coli in the early 1960s as a process whereby bulky base damage is enzymatically removed from DNA, facilitating the recove...
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • FLJ22530

Gene Ontology Provided by GOA

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
ATP-dependent DNA helicase activity TAS
Traceable Author Statement
more info
PubMed 
ATPase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
nucleotide binding IDA
Inferred from Direct Assay
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
cytosol IDA
Inferred from Direct Assay
more info
 
nucleoplasm IDA
Inferred from Direct Assay
more info
 
nucleoplasm TAS
Traceable Author Statement
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
plasma membrane IDA
Inferred from Direct Assay
more info
 
Preferred Names
chromodomain-helicase-DNA-binding protein 1-like
Names
amplified in liver cancer 1
amplified in liver cancer protein 1
NP_001243265.1
NP_001243266.1
NP_001243267.1
NP_004275.4
NP_078844.2
XP_006711702.1
XP_016858347.1
XP_016858348.1
XP_016858349.1
XP_016858350.1
XP_016858351.1
XP_016858352.1
XP_016858353.1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_052905.1 RefSeqGene

    Range
    74448..127573
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001256336.2NP_001243265.1  chromodomain-helicase-DNA-binding protein 1-like isoform 2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) lacks an alternate exon in the 5' coding region which results in translation from a downstream start codon, compared to variant 1. The resulting protein (isoform 2) is shorter when it is compared to isoform 1.
    Source sequence(s)
    AC242426
    Consensus CDS
    CCDS72882.1
    UniProtKB/TrEMBL
    A0A0A0MSH9
    Related
    ENSP00000389031.2, ENST00000431239.5
    Conserved Domains (5) summary
    PLN03142
    Location:16599
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd00046
    Location:15105
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd03331
    Location:616766
    Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
    pfam00271
    Location:246359
    Helicase_C; Helicase conserved C-terminal domain
    pfam06936
    Location:546595
    Selenoprotein_S; Selenoprotein S (SelS)
  2. NM_001256337.2NP_001243266.1  chromodomain-helicase-DNA-binding protein 1-like isoform 4

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) lacks several exons in the 5' coding region which results in translation from a downstream start codon, compared to variant 1. The resulting protein (isoform 4) is shorter when it is compared to isoform 1. Variants 4 and 12-22 all encode the same isoform (4).
    Source sequence(s)
    AC242426
    Consensus CDS
    CCDS58022.1
    UniProtKB/TrEMBL
    A0A0A0MRH8
    Related
    ENSP00000355100.5, ENST00000361293.9
    Conserved Domains (2) summary
    cd03331
    Location:435585
    Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
    cl26465
    Location:1418
    SNF2_N; SNF2 family N-terminal domain
  3. NM_001256338.2NP_001243267.1  chromodomain-helicase-DNA-binding protein 1-like isoform 5

    See identical proteins and their annotated locations for NP_001243267.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (5) lacks several exons in the 5' coding region which results in translation from a downstream start codon, compared to variant 1. The resulting protein (isoform 5) is shorter when it is compared to isoform 1.
    Source sequence(s)
    AC242426
    Consensus CDS
    CCDS58021.1
    UniProtKB/Swiss-Prot
    Q86WJ1
    Related
    ENSP00000358263.3, OTTHUMP00000276925, ENST00000369259.4, OTTHUMT00000046315
    Conserved Domains (2) summary
    cd03331
    Location:512662
    Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
    cl26465
    Location:44495
    SNF2_N; SNF2 family N-terminal domain
  4. NM_001348451.1NP_001335380.1  chromodomain-helicase-DNA-binding protein 1-like isoform 6

    Status: REVIEWED

    Description
    Transcript Variant: This variant (7), as well as variant 8, encodes isoform 6.
    Source sequence(s)
    AC241584, AC242426
    Conserved Domains (2) summary
    cd03331
    Location:644794
    Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
    cl26465
    Location:1627
    SNF2_N; SNF2 family N-terminal domain
  5. NM_001348452.1NP_001335381.1  chromodomain-helicase-DNA-binding protein 1-like isoform 6

    Status: REVIEWED

    Description
    Transcript Variant: This variant (8), as well as variant 7, encodes isoform 6.
    Source sequence(s)
    AC242426
    Conserved Domains (2) summary
    cd03331
    Location:644794
    Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
    cl26465
    Location:1627
    SNF2_N; SNF2 family N-terminal domain
  6. NM_001348453.1NP_001335382.1  chromodomain-helicase-DNA-binding protein 1-like isoform 3

    Status: REVIEWED

    Source sequence(s)
    AC242426
    Conserved Domains (2) summary
    cd03331
    Location:603753
    Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
    cl26465
    Location:2586
    SNF2_N; SNF2 family N-terminal domain
  7. NM_001348454.1NP_001335383.1  chromodomain-helicase-DNA-binding protein 1-like isoform 8

    Status: REVIEWED

    Source sequence(s)
    AC242426
    Conserved Domains (2) summary
    cd03331
    Location:564714
    Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
    cl26465
    Location:45547
    SNF2_N; SNF2 family N-terminal domain
  8. NM_001348455.1NP_001335384.1  chromodomain-helicase-DNA-binding protein 1-like isoform 9

    Status: REVIEWED

    Source sequence(s)
    AC242426
    Conserved Domains (2) summary
    cd03331
    Location:553703
    Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
    cl26465
    Location:2536
    SNF2_N; SNF2 family N-terminal domain
  9. NM_001348456.1NP_001335385.1  chromodomain-helicase-DNA-binding protein 1-like isoform 4

    Status: REVIEWED

    Description
    Transcript Variant: This variant (12), as well as variants 4 and 13-22, encodes isoform 4.
    Source sequence(s)
    AC242426
    UniProtKB/TrEMBL
    A0A0A0MRH8
    Conserved Domains (2) summary
    cd03331
    Location:435585
    Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
    cl26465
    Location:1418
    SNF2_N; SNF2 family N-terminal domain
  10. NM_001348457.1NP_001335386.1  chromodomain-helicase-DNA-binding protein 1-like isoform 4

    Status: REVIEWED

    Description
    Transcript Variant: This variant (13), as well as variants 4, 12, and 14-22, encodes isoform 4.
    Source sequence(s)
    AC242426
    UniProtKB/TrEMBL
    A0A0A0MRH8
    Conserved Domains (2) summary
    cd03331
    Location:435585
    Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
    cl26465
    Location:1418
    SNF2_N; SNF2 family N-terminal domain
  11. NM_001348458.1NP_001335387.1  chromodomain-helicase-DNA-binding protein 1-like isoform 4

    Status: REVIEWED

    Description
    Transcript Variant: This variant (14), as well as variants 4, 12-13, and 15-22, encodes isoform 4.
    Source sequence(s)
    AC242426
    UniProtKB/TrEMBL
    A0A0A0MRH8
    Conserved Domains (2) summary
    cd03331
    Location:435585
    Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
    cl26465
    Location:1418
    SNF2_N; SNF2 family N-terminal domain
  12. NM_001348459.1NP_001335388.1  chromodomain-helicase-DNA-binding protein 1-like isoform 4

    Status: REVIEWED

    Description
    Transcript Variant: This variant (15), as well as variants 4, 12-14, and 16-22, encodes isoform 4.
    Source sequence(s)
    AC242426
    UniProtKB/TrEMBL
    A0A0A0MRH8
    Conserved Domains (2) summary
    cd03331
    Location:435585
    Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
    cl26465
    Location:1418
    SNF2_N; SNF2 family N-terminal domain
  13. NM_001348460.1NP_001335389.1  chromodomain-helicase-DNA-binding protein 1-like isoform 4

    Status: REVIEWED

    Description
    Transcript Variant: This variant (16), as well as variants 4, 12-15, and 17-22, encodes isoform 4.
    Source sequence(s)
    AC242426
    UniProtKB/TrEMBL
    A0A0A0MRH8
    Conserved Domains (2) summary
    cd03331
    Location:435585
    Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
    cl26465
    Location:1418
    SNF2_N; SNF2 family N-terminal domain
  14. NM_001348461.1NP_001335390.1  chromodomain-helicase-DNA-binding protein 1-like isoform 4

    Status: REVIEWED

    Description
    Transcript Variant: This variant (17), as well as variants 4, 12-16, and 18-22, encodes isoform 4.
    Source sequence(s)
    AC242426
    UniProtKB/TrEMBL
    A0A0A0MRH8
    Conserved Domains (2) summary
    cd03331
    Location:435585
    Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
    cl26465
    Location:1418
    SNF2_N; SNF2 family N-terminal domain
  15. NM_001348462.1NP_001335391.1  chromodomain-helicase-DNA-binding protein 1-like isoform 4

    Status: REVIEWED

    Description
    Transcript Variant: This variant (18), as well as variants 4, 12-17, and 19-22, encodes isoform 4.
    Source sequence(s)
    AC242426
    UniProtKB/TrEMBL
    A0A0A0MRH8
    Conserved Domains (2) summary
    cd03331
    Location:435585
    Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
    cl26465
    Location:1418
    SNF2_N; SNF2 family N-terminal domain
  16. NM_001348463.1NP_001335392.1  chromodomain-helicase-DNA-binding protein 1-like isoform 4

    Status: REVIEWED

    Description
    Transcript Variant: This variant (19), as well as variants 4, 12-18, and 20-22, encodes isoform 4.
    Source sequence(s)
    AC242426
    UniProtKB/TrEMBL
    A0A0A0MRH8
    Conserved Domains (2) summary
    cd03331
    Location:435585
    Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
    cl26465
    Location:1418
    SNF2_N; SNF2 family N-terminal domain
  17. NM_001348464.1NP_001335393.1  chromodomain-helicase-DNA-binding protein 1-like isoform 4

    Status: REVIEWED

    Description
    Transcript Variant: This variant (20), as well as variants 4, 12-19 and 21-22, encodes isoform 4.
    Source sequence(s)
    AC242426
    UniProtKB/TrEMBL
    A0A0A0MRH8
    Conserved Domains (2) summary
    cd03331
    Location:435585
    Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
    cl26465
    Location:1418
    SNF2_N; SNF2 family N-terminal domain
  18. NM_001348465.1NP_001335394.1  chromodomain-helicase-DNA-binding protein 1-like isoform 4

    Status: REVIEWED

    Description
    Transcript Variant: This variant (21), as well as variants 4, 12-20 and 22, encodes isoform 4.
    Source sequence(s)
    AC242426
    UniProtKB/TrEMBL
    A0A0A0MRH8
    Conserved Domains (2) summary
    cd03331
    Location:435585
    Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
    cl26465
    Location:1418
    SNF2_N; SNF2 family N-terminal domain
  19. NM_001348466.1NP_001335395.1  chromodomain-helicase-DNA-binding protein 1-like isoform 4

    Status: REVIEWED

    Description
    Transcript Variant: This variant (22), as well as variants 4 and 12-21, encodes isoform 4.
    Source sequence(s)
    AC242426
    UniProtKB/TrEMBL
    A0A0A0MRH8
    Conserved Domains (2) summary
    cd03331
    Location:435585
    Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
    cl26465
    Location:1418
    SNF2_N; SNF2 family N-terminal domain
  20. NM_004284.5NP_004275.4  chromodomain-helicase-DNA-binding protein 1-like isoform 1

    See identical proteins and their annotated locations for NP_004275.4

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1).
    Source sequence(s)
    AC242426
    Consensus CDS
    CCDS927.1
    UniProtKB/Swiss-Prot
    Q86WJ1
    Related
    ENSP00000358262.4, OTTHUMP00000016308, ENST00000369258.8, OTTHUMT00000040377
    Conserved Domains (5) summary
    cd00046
    Location:65205
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd03331
    Location:716866
    Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
    pfam00176
    Location:49328
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:346459
    Helicase_C; Helicase conserved C-terminal domain
    pfam06936
    Location:579695
    Selenoprotein_S; Selenoprotein S (SelS)
  21. NM_024568.3NP_078844.2  chromodomain-helicase-DNA-binding protein 1-like isoform 3

    See identical proteins and their annotated locations for NP_078844.2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) uses a different splice site in the 5' coding region which results in translation from a downstream start codon, compared to variant 1. The resulting protein (isoform 3) is shorter when it is compared to isoform 1. Variants 3 and 9 both encode the same isoform (3).
    Source sequence(s)
    AC242426
    Conserved Domains (2) summary
    cd03331
    Location:603753
    Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
    cl26465
    Location:2586
    SNF2_N; SNF2 family N-terminal domain

RNA

  1. NR_046070.2 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (6) lacks two alternate internal exons, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay.(NMD).
    Source sequence(s)
    AC242426
    Related
    ENST00000467213.5, OTTHUMT00000046314
  2. NR_145681.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC242426
  3. NR_145682.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC242426
  4. NR_145683.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC242426
  5. NR_145684.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC242426
  6. NR_145685.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC242426
  7. NR_145686.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC242426
  8. NR_145687.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC242426
  9. NR_145688.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC242426
  10. NR_145689.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC242426
  11. NR_145690.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC242426
  12. NR_145691.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC242426
  13. NR_145692.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC242426
  14. NR_145693.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC242426
  15. NR_145694.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC242426
  16. NR_145695.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC242426

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 108

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p7 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p7 Primary Assembly

    Range
    147172804..147295766
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017002858.1XP_016858347.1  chromodomain-helicase-DNA-binding protein 1-like isoform X1

    Conserved Domains (2) summary
    cd03331
    Location:644794
    Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
    cl26465
    Location:1627
    SNF2_N; SNF2 family N-terminal domain
  2. XM_006711639.3XP_006711702.1  chromodomain-helicase-DNA-binding protein 1-like isoform X2

    Conserved Domains (2) summary
    cd03331
    Location:603753
    Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
    cl26465
    Location:2586
    SNF2_N; SNF2 family N-terminal domain
  3. XM_017002860.1XP_016858349.1  chromodomain-helicase-DNA-binding protein 1-like isoform X3

    Conserved Domains (2) summary
    cd03331
    Location:435585
    Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
    cl26465
    Location:1418
    SNF2_N; SNF2 family N-terminal domain
  4. XM_017002861.1XP_016858350.1  chromodomain-helicase-DNA-binding protein 1-like isoform X4

  5. XM_017002864.1XP_016858353.1  chromodomain-helicase-DNA-binding protein 1-like isoform X4

  6. XM_017002863.1XP_016858352.1  chromodomain-helicase-DNA-binding protein 1-like isoform X4

  7. XM_017002859.1XP_016858348.1  chromodomain-helicase-DNA-binding protein 1-like isoform X1

    Conserved Domains (2) summary
    cd03331
    Location:644794
    Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
    cl26465
    Location:1627
    SNF2_N; SNF2 family N-terminal domain
  8. XM_017002862.1XP_016858351.1  chromodomain-helicase-DNA-binding protein 1-like isoform X4

RNA

  1. XR_001737550.1 RNA Sequence

    Related
    ENST00000622533.4, OTTHUMT00000477677

Alternate CHM1_1.1

Genomic

  1. NC_018912.2 Alternate CHM1_1.1

    Range
    148610767..148663892
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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