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dsdX D-serine transporter [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 949103, updated on 3-Dec-2024

Summary

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Official Symbol
dsdX
Official Full Name
D-serine transporter
Primary source
ECOCYC:EG10250
Locus tag
b2365
See related
ASAP:ABE-0007801
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
dsdC; ECK2361; yfdA; yfdD
Summary
DsdX has been functionally characterized in Escherichia coli strain CFT073 (Anfora, 2006). [More information is available at EcoGene: EG10250]. DsdX is a transporter of unknown function belonging to the Gnt family of gluconate transporters . [More information is available at EcoCyc: EG10250].
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Genomic context

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Sequence:
NC_000913.3 (2477847..2479184)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene DNA-binding transcriptional dual regulator DsdC Neighboring gene D-serine ammonia-lyase Neighboring gene tripartite efflux pump membrane subunit EmrY Neighboring gene tripartite efflux pump membrane fusion protein EmrK

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. DsdX is the second D-serine transporter in uropathogenic Escherichia coli clinical isolate CFT073. Anfora AT, et al. J Bacteriol, 2006 Sep. PMID 16952954, Free PMC Article
  2. Analysis of the gluconate (gnt) operon of Bacillus subtilis. Reizer A, et al. Mol Microbiol, 1991 May. PMID 1659648
  3. Transfer of a gene for sucrose utilization into Escherichia coli K12, and consequent failure of expression of genes for D-serine utilization. Alaeddinoglu NG, et al. J Gen Microbiol, 1979 Jan. PMID 372492
  4. Physical mapping of the Escherichia coli D-serine deaminase region: contiguity of the dsd structural and regulatory genes. Carothers AM, et al. J Bacteriol, 1980 Apr. PMID 6246062, Free PMC Article
  5. Identification and control of synthesis of the dsdC activator protein. McFall E, et al. J Bacteriol, 1983 Feb. PMID 6296057, Free PMC Article

See all (22) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables D-serine transmembrane transporter activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables gluconate transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables gluconate transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within D-serine transmembrane transport ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
acts_upstream_of_or_within DNA damage response IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in amino acid transport IEA
Inferred from Electronic Annotation
more info
  
involved_in gluconate transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in gluconate transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 

General protein information

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Preferred Names
D-serine transporter

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2477847..2479184
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416866.1 D-serine transporter [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416866.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A7D7IMB7
    Conserved Domains (1) summary
    PRK09921
    Location:1 → 445
    PRK09921; permease DsdX; Provisional
Nucleotide Protein
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