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yehR [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 949023, updated on 11-Sep-2024

Summary

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Official Symbol
yehR
Primary source
ECOCYC:EG12004
Locus tag
b2123
See related
ASAP:ABE-0007018
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2115
Summary
First 22 aa are a type II signal peptide. [More information is available at EcoGene: EG12004].
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Genomic context

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Sequence:
NC_000913.3 (2211225..2211686)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein YehM Neighboring gene VWA domain-containing protein YehP Neighboring gene SWIM zinc finger domains-containing protein YehQ Neighboring gene DUF1456 domain-containing protein YehS Neighboring gene DNA-binding transcriptional dual regulator BtsR Neighboring gene high-affinity pyruvate receptor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Systematic Localization of Escherichia coli Membrane Proteins. Sueki A, et al. mSystems, 2020 Mar 3. PMID 32127419, Free PMC Article
  2. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
  3. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130
  4. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
  5. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
located_in plasma membrane HDA PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DUF1307 domain-containing lipoprotein YehR

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2211225..2211686
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416627.2 DUF1307 domain-containing lipoprotein YehR [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416627.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A377K3W4
    Conserved Domains (1) summary
    COG4808
    Location:1 → 153
    YehR; Uncharacterized lipoprotein YehR, DUF1307 family [Function unknown]
Nucleotide Protein
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