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ppdB prepilin-type N-terminal cleavage/methylation domain-containing protein PpdB [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948985, updated on 3-Dec-2024
Official Symbol
ppdB
Official Full Name
prepilin-type N-terminal cleavage/methylation domain-containing protein PpdB
Primary source
ECOCYC:EG11156
Locus tag
b2825
See related
ASAP:ABE-0009263
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2821; ygdC
Summary
A ppdAB mutant does not exhibit defects in chemotaxis or flagellar motility . [More information is available at EcoCyc: EG11156].
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Sequence:
NC_000913.3 (2963153..2963716, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene exodeoxyribonuclease V subunit RecC Neighboring gene prepilin-type N-terminal cleavage/methylation domain-containing protein PpdC Neighboring gene DUF2509 domain-containing protein YgdB Neighboring gene prepilin-type N-terminal cleavage/methylation domain-containing protein PpdA Neighboring gene thymidylate synthase Neighboring gene phosphatidylglycerol--prolipoprotein diacylglyceryl transferase

Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Novel sigmaF-dependent genes of Escherichia coli found using a specified promoter consensus. Park K, et al. FEMS Microbiol Lett, 2001 Aug 21. PMID 11520622
  2. Common components in the assembly of type 4 fimbriae, DNA transfer systems, filamentous phage and protein-secretion apparatus: a general system for the formation of surface-associated protein complexes. Hobbs M, et al. Mol Microbiol, 1993 Oct. PMID 7934814
  3. Complete nucleotide sequence of the Escherichia coli recC gene and of the thyA-recC intergenic region. Finch PW, et al. Nucleic Acids Res, 1986 Jun 11. PMID 3520484, Free PMC Article
  4. Membranome: a database for proteome-wide analysis of single-pass membrane proteins. Lomize AL, et al. Nucleic Acids Res, 2017 Jan 4. PMID 27510400, Free PMC Article
  5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
involved_in protein secretion by the type II secretion system IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
Preferred Names
prepilin-type N-terminal cleavage/methylation domain-containing protein PpdB

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2963153..2963716 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417302.1 prepilin-type N-terminal cleavage/methylation domain-containing protein PpdB [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417302.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A5C9ADK0
    Conserved Domains (1) summary
    PRK10557
    Location:1 → 187
    PRK10557; prepilin peptidase-dependent protein
Nucleotide Protein
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