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srlR [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948942, updated on 11-Sep-2024

Summary

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Official Symbol
srlR
Primary source
ECOCYC:EG10974
Locus tag
b2707
See related
ASAP:ABE-0008900
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2702; gutR
Summary
It is a transcriptional repressor for the glucitol utilization. [More information is available at EcoCyc: EG10974].
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Genomic context

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Sequence:
NC_000913.3 (2829047..2829820)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene sorbitol-6-phosphate 2-dehydrogenase Neighboring gene DNA-binding transcriptional activator GutM Neighboring gene D-arabinose 5-phosphate isomerase GutQ Neighboring gene DNA-binding transcriptional dual regulator NorR Neighboring gene anaerobic nitric oxide reductase flavorubredoxin Neighboring gene NADH:flavorubredoxin reductase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Physical mapping of the srl recA region of Escherichia coli: analysis of Tn10 generated insertions and deletions. Willis DK, et al. Mol Gen Genet, 1981. PMID 6278241
  2. Genetic analysis of the Escherichia coli K-12 srl region. McEntee K. J Bacteriol, 1977 Dec. PMID 336611, Free PMC Article
  3. Construction of a contiguous 874-kb sequence of the Escherichia coli -K12 genome corresponding to 50.0-68.8 min on the linkage map and analysis of its sequence features. Yamamoto Y, et al. DNA Res, 1997 Apr 28. PMID 9205837
  4. Physical and genetic characterization of the glucitol operon in Escherichia coli. Yamada M, et al. J Bacteriol, 1987 Jul. PMID 3036766, Free PMC Article
  5. Glucitol-specific enzymes of the phosphotransferase system in Escherichia coli. Nucleotide sequence of the gut operon. Yamada M, et al. J Biol Chem, 1987 Apr 25. PMID 3553176

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within negative regulation of DNA-templated transcription IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in phosphoenolpyruvate-dependent sugar phosphotransferase system IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DNA-binding transcriptional repressor SrlR

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2829047..2829820
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417187.1 DNA-binding transcriptional repressor SrlR [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417187.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A7D7IRV2
    Conserved Domains (1) summary
    PRK10434
    Location:1 → 256
    srlR; DNA-binding transcriptional repressor
Nucleotide Protein
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