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trpR DNA-binding transcriptional repressor TrpR [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948917, updated on 10-Oct-2019

Summary

Gene symbol
trpR
Gene description
DNA-binding transcriptional repressor TrpR
Primary source
EcoGene:EG11029
Locus tag
b4393
See related
ASAP:ABE-0014408; ECOCYC:EG11029
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK4385; rtrY

Genomic context

Sequence:
NC_000913.3 (4632760..4633086)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene energy-dependent translational throttle protein EttA Neighboring gene soluble lytic murein transglycosylase Neighboring gene ITPase/XTPase Neighboring gene putative phosphatase Neighboring gene DNA-binding transcriptional dual regulator Rob

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by GO

Function Evidence Code Pubs
DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
negative regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
regulation of transcription, DNA-templated IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of transcription, DNA-templated IDA
Inferred from Direct Assay
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
DNA-binding transcriptional repressor TrpR

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4632760..4633086
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418810.1 DNA-binding transcriptional repressor TrpR [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418810.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P0A881
    Conserved Domains (1) summary
    COG2973
    Location:6108
    TrpR; Trp operon repressor [Transcription]
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