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deoB phosphopentomutase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948910, updated on 19-Sep-2024

Summary

Official Symbol
deoB
Official Full Name
phosphopentomutase
Primary source
ECOCYC:EG10220
Locus tag
b4383
See related
ASAP:ABE-0014377
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
drm; ECK4375; thyR; tlr
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Genomic context

Sequence:
NC_000913.3 (4619603..4620826)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene deoxyribose-phosphate aldolase Neighboring gene thymidine phosphorylase Neighboring gene purine nucleoside phosphorylase Neighboring gene toxin YjjJ

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables isomerase activity IEA
Inferred from Electronic Annotation
more info
 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 
enables manganese ion binding IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables phosphopentomutase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables phosphopentomutase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables phosphopentomutase activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytosol IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
phosphopentomutase
NP_418800.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4619603..4620826
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418800.1 phosphopentomutase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418800.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A418GHU9
    Conserved Domains (1) summary
    PRK05362
    Location:1407
    PRK05362; phosphopentomutase; Provisional