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ydcI DNA-binding transcriptional dual regulator YdcI [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948865, updated on 3-Dec-2024

Summary

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Official Symbol
ydcI
Official Full Name
DNA-binding transcriptional dual regulator YdcI
Primary source
ECOCYC:G6737
Locus tag
b1422
See related
ASAP:ABE-0004746
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1416
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Genomic context

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Sequence:
NC_000913.3 (1494148..1495071, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative regulatory protein MokB Neighboring gene ncRNA Neighboring gene methyl-accepting chemotaxis protein Trg Neighboring gene DUF1338 domain-containing protein YdcJ Neighboring gene glucans biosynthesis protein D

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Bacterial genus-specific tolerance for YdcI expression. Solomon L, et al. Curr Microbiol, 2014 Nov. PMID 24962596
  2. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
  3. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within negative regulation of DNA-templated transcription IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
DNA-binding transcriptional dual regulator YdcI

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1494148..1495071 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415939.2 DNA-binding transcriptional dual regulator YdcI [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415939.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2W6P759, A0A376W4Z7, A0A793CA97, A0A7A6W2R1
    Conserved Domains (1) summary
    TIGR02424
    Location:9 → 302
    TF_pcaQ; pca operon transcription factor PcaQ
Nucleotide Protein
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