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fimF [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948845, updated on 24-Aug-2024

Summary

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Official Symbol
fimF
Primary source
ECOCYC:EG10313
Locus tag
b4318
See related
ASAP:ABE-0014153
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK4309
Summary
One of 25 FimA homologs in EcoGene. [More information is available at EcoGene: EG10313]. FimF is a minor component of the type 1 fimbriae in Escherichia coli Two-dimensional gel electrophoresis indicated that FimF has a molecular weight of 18.0 kDa and exists in a 1:100 ratio with the major fimbrial subunit, FimA . [More information is available at EcoCyc: EG10313].
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Genomic context

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Sequence:
NC_000913.3 (4547742..4548272)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene type 1 fimbriae periplasmic chaperone Neighboring gene type I fimbriae usher protein Neighboring gene type 1 fimbriae minor subunit FimG Neighboring gene type 1 fimbriae D-mannose specific adhesin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. NMR assignment of the E. coli type 1 pilus protein FimF. Gossert AD, et al. J Biomol NMR, 2007 Jun. PMID 17417715
  2. Infinite kinetic stability against dissociation of supramolecular protein complexes through donor strand complementation. Puorger C, et al. Structure, 2008 Apr. PMID 18400183
  3. Pilus chaperones represent a new type of protein-folding catalyst. Vetsch M, et al. Nature, 2004 Sep 16. PMID 15372038
  4. Three fim genes required for the regulation of length and mediation of adhesion of Escherichia coli type 1 fimbriae. Klemm P, et al. Mol Gen Genet, 1987 Jul. PMID 2890081
  5. Structural basis for mechanical force regulation of the adhesin FimH via finger trap-like beta sheet twisting. Le Trong I, et al. Cell, 2010 May 14. PMID 20478255, Free PMC Article

See all (40) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The complex between the pilus subunit FimG and the donor strand peptide of the subunit FimF shows an extrapolated dissociation half-life of 3 x 10(9) years.
    Title: Infinite kinetic stability against dissociation of supramolecular protein complexes through donor strand complementation.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
  
involved_in cell adhesion IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in cell adhesion involved in single-species biofilm formation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in cell-substrate adhesion IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in mechanosensory behavior IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within pilus assembly EXP
Inferred from Experiment
more info
 PubMed 
involved_in pilus organization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in pilus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in pilus IEA
Inferred from Electronic Annotation
more info
  
located_in pilus tip IPI
Inferred from Physical Interaction
more info
 PubMed 

General protein information

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Preferred Names
type 1 fimbriae minor subunit FimF

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4547742..4548272
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418738.1 type 1 fimbriae minor subunit FimF [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418738.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A1X3HZJ3
    Conserved Domains (1) summary
    COG3539
    Location:1 → 176
    FimA; Pilin (type 1 fimbria component protein) [Cell motility]
Nucleotide Protein
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