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fimD type I fimbriae usher protein [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948844, updated on 6-May-2021

Summary

Gene symbol
fimD
Gene description
type I fimbriae usher protein
Primary source
ECOCYC:EG10311
Locus tag
b4317
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK4308; fimD_1; fimD_2
Summary
FimD forms pores in the outer membrane. [More information is available at EcoGene: EG10311]. FimD is a member of the Fimbrial Usher Porin (FUP) family . [More information is available at EcoCyc: EG10311].
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Genomic context

Sequence:
NC_000913.3 (4545096..4547732)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative fimbrial protein FimI Neighboring gene type 1 fimbriae periplasmic chaperone Neighboring gene type 1 fimbriae minor subunit FimF Neighboring gene type 1 fimbriae minor subunit FimG

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Gene Ontology Provided by GO

Function Evidence Code Pubs
enables fimbrial usher porin activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables fimbrial usher porin activity IDA
Inferred from Direct Assay
more info
PubMed 
enables fimbrial usher porin activity IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in pilus assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within pilus assembly IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within pilus assembly IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cell outer membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cell outer membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in cell outer membrane IEA
Inferred from Electronic Annotation
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
type I fimbriae usher protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4545096..4547732
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418737.1 type I fimbriae usher protein [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418737.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P30130
    Conserved Domains (1) summary
    COG3188
    Location:11878
    FimD; Outer membrane usher protein FimD/PapC [Cell motility, Extracellular structures]
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