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ytfJ [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948737, updated on 24-Aug-2024

Summary

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Official Symbol
ytfJ
Primary source
ASAP:ABE-0013792
Locus tag
b4216
See related
ECOCYC:G7871
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ecfJ; ECK4212
Summary
Overexpression causes filamentous biofilm formation. [More information is available at EcoGene: EG12510]. YtfJ is a protein with a possible extracytoplasmic function . [More information is available at EcoCyc: G7871].
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Genomic context

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Sequence:
NC_000913.3 (4438708..4439262, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene 3'(2'),5'-bisphosphate nucleotidase Neighboring gene protein YtfI Neighboring gene stringent response modulator YtfK Neighboring gene putative cadaverine/putrescine exporter

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of products of the Escherichia coli genomic genes and regulation of their expressions: an applicable procedure for genomic analysis of other microorganisms. Talukder AA, et al. Biosci Biotechnol Biochem, 1994 Jan. PMID 7764507
  2. Characterization of the Escherichia coli sigma E regulon. Dartigalongue C, et al. J Biol Chem, 2001 Jun 15. PMID 11274153
  3. Systematic characterization of Escherichia coli genes/ORFs affecting biofilm formation. Tenorio E, et al. FEMS Microbiol Lett, 2003 Aug 8. PMID 12900028
  4. Enrichment of low abundance proteins of Escherichia coli by hydroxyapatite chromatography. Fountoulakis M, et al. Electrophoresis, 1999 Aug. PMID 10493123
  5. Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Link AJ, et al. Electrophoresis, 1997 Aug. PMID 9298646

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. N-terminus verified by Edman degradation on mature peptide
    Title: Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12.
Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
located_in periplasmic space IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
PF09695 family protein YtfJ

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4438708..4439262 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418637.1 PF09695 family protein YtfJ [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418637.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376MDG2
    Conserved Domains (1) summary
    COG3054
    Location:1 → 184
    YtfJ; Predicted transcriptional regulator [General function prediction only]
Nucleotide Protein
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