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cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948729, updated on 9-Mar-2022

Summary

Gene symbol
cpdB
Gene description
2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase
Primary source
ASAP:ABE-0013782
Locus tag
b4213
See related
ECOCYC:EG10160
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK4209
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Genomic context

Sequence:
NC_000913.3 (4434622..4436565, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene NAD(P)H:quinone oxidoreductase Neighboring gene putative transcriptional regulator YtfH Neighboring gene 3'(2'),5'-bisphosphate nucleotidase Neighboring gene protein YtfI

Pathways from PubChem

General gene information

Gene Ontology Provided by GO

Function Evidence Code Pubs
enables 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 
enables 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity RCA
inferred from Reviewed Computational Analysis
more info
PubMed 
enables 3'-nucleotidase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables 3'-nucleotidase activity IEA
Inferred from Electronic Annotation
more info
 
enables 3'-nucleotidase activity RCA
inferred from Reviewed Computational Analysis
more info
PubMed 
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
enables hydrolase activity, acting on ester bonds IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to DNA damage stimulus IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in dephosphorylation IEA
Inferred from Electronic Annotation
more info
 
involved_in metabolic process IEA
Inferred from Electronic Annotation
more info
 
involved_in nucleotide catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in nucleotide catabolic process IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within nucleotide catabolic process IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in nucleotide metabolic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in outer membrane-bounded periplasmic space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in outer membrane-bounded periplasmic space IDA
Inferred from Direct Assay
more info
PubMed 
located_in periplasmic space IDA
Inferred from Direct Assay
more info
PubMed 
located_in periplasmic space IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase
NP_418634.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4434622..4436565 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418634.1 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418634.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P08331
    Conserved Domains (1) summary
    PRK09420
    Location:1647
    cpdB; bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase