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rpsF 30S ribosomal subunit protein S6 [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948723, updated on 26-Mar-2025
Official Symbol
rpsF
Official Full Name
30S ribosomal subunit protein S6
Primary source
ECOCYC:EG10905
Locus tag
b4200
See related
ASAP:ABE-0013740
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK4196; sdgH
Summary
RpsF is modified posttranslationally by RimK, which adds four glutamic acid residues to the RpsF C-terminus. [More information is available at EcoGene: EG10905]. The S6 protein is a component of the 30S subunit of the ribosome. [More information is available at EcoCyc: EG10905].
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Sequence:
NC_000913.3 (4425118..4425513)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene L-ribulose-5-phosphate 3-epimerase UlaE Neighboring gene L-ribulose-5-phosphate 4-epimerase UlaF Neighboring gene DUF1471 domain-containing protein YjfY Neighboring gene primosomal replication protein N Neighboring gene 30S ribosomal subunit protein S18

Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Determination of the complete amino-acid sequence of protein S6 from the wild-type and a mutant of Escherichia coli. Hitz H, et al. Eur J Biochem, 1977 May 16. PMID 328274
  2. [Antisense RNA mediated gene silencing of nonessential gene rpsF in Escherichia coli]. Tang X, et al. Wei Sheng Wu Xue Bao, 2014 Apr 4. PMID 25007658
  3. A new ribosomal protein locus in Escherichia coli: the gene for protein S6 maps at 97 min. Isono K, et al. Mol Gen Genet, 1977 Jun 8. PMID 329109
  4. Post-translational modification of Escherichia coli ribosomal protein S6. Reeh S, et al. Mol Gen Genet, 1979 Jun 7. PMID 386035
  5. Positive control of a global antioxidant defense regulon activated by superoxide-generating agents in Escherichia coli. Greenberg JT, et al. Proc Natl Acad Sci U S A, 1990 Aug. PMID 1696718, Free PMC Article

See all (52) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. S6 modification is regulated solely via the rate of ribosome biosynthesis at limiting concentration of RimK enzyme.
    Title: Oligoglutamylation of E. coli ribosomal protein S6 is under growth phase control.
  2. Gene silencing of nonessential gene rpsF reduced cell growth.
    Title: [Antisense RNA mediated gene silencing of nonessential gene rpsF in Escherichia coli].
  3. N-terminus verified by Edman degradation on complete protein
    Title: Small genes/gene-products in Escherichia coli K-12.
Submit: New GeneRIF Correction
Products Interactant Other Gene Complex Source Pubs Description

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables mRNA 5'-UTR binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables rRNA binding IEA
Inferred from Electronic Annotation
more info
  
enables small ribosomal subunit rRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables small ribosomal subunit rRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cytoplasmic translation NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
part_of cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of cytosolic small ribosomal subunit IDA
Inferred from Direct Assay
more info
 PubMed 
part_of cytosolic small ribosomal subunit IPI
Inferred from Physical Interaction
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  
Preferred Names
30S ribosomal subunit protein S6

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4425118..4425513
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418621.5 30S ribosomal subunit protein S6 [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418621.5

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0AAD2ZBD5
    Conserved Domains (1) summary
    PRK00453
    Location:1 → 107
    rpsF; 30S ribosomal protein S6; Reviewed
Nucleotide Protein
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