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phnJ carbon-phosphorus lyase core complex subunit PhnJ [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948606, updated on 6-May-2021

Summary

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Gene symbol
phnJ
Gene description
carbon-phosphorus lyase core complex subunit PhnJ
Primary source
ASAP:ABE-0013426
Locus tag
b4098
See related
ECOCYC:EG10719
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK4091
Summary
Phosphonate utilization is cryptic in K-12. [More information is available at EcoGene: EG10719]. PhnJ appears to be a component of a carbon-phosphorous lyase enzyme. phnJis part of an operon that is phosphate starvation-inducible and required for use of phosphonate and phosphite as phosphorous sources . [More information is available at EcoCyc: EG10719].
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Genomic context

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Sequence:
NC_000913.3 (4318761..4319606, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene aminoalkylphosphonate N-acetyltransferase Neighboring gene ribose 1,5-bisphosphate phosphokinase Neighboring gene RPnTP hydrolase Neighboring gene methylphosphonate degradation complex subunit PhnL Neighboring gene carbon-phosphorus lyase subunit PhnK Neighboring gene carbon-phosphorus lyase core complex subunit PhnI Neighboring gene carbon-phosphorus lyase core complex subunit PhnH Neighboring gene carbon-phosphorus lyase core complex subunit PhnG Neighboring gene putative transcriptional regulator PhnF

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Subunit Interactions within the Carbon-Phosphorus Lyase Complex from Escherichia coli. Ren Z, et al. Biochemistry, 2015 Jun 2. PMID 25954983, Free PMC Article
  2. Five phosphonate operon gene products as components of a multi-subunit complex of the carbon-phosphorus lyase pathway. Jochimsen B, et al. Proc Natl Acad Sci U S A, 2011 Jul 12. PMID 21705661, Free PMC Article
  3. Mapping and molecular cloning of the phn (psiD) locus for phosphonate utilization in Escherichia coli. Wanner BL, et al. J Bacteriol, 1990 Mar. PMID 2155195, Free PMC Article
  4. Phosphate-independent expression of the carbon-phosphorus lyase activity of Escherichia coli. Yakovleva GM, et al. Appl Microbiol Biotechnol, 1998 May. PMID 9650256
  5. Intermediates in the transformation of phosphonates to phosphate by bacteria. Kamat SS, et al. Nature, 2011 Nov 16. PMID 22089136, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Gene Ontology Provided by GO

Function Evidence Code Pubs
enables 4 iron, 4 sulfur cluster binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables 4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
  
enables alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase activity IEA
Inferred from Electronic Annotation
more info
  
enables iron-sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
  
enables lyase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables lyase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within organic phosphonate catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within organic phosphonate catabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of carbon phosphorus lyase complex IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
carbon-phosphorus lyase core complex subunit PhnJ
NP_418522.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4318761..4319606 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418522.1 carbon-phosphorus lyase core complex subunit PhnJ [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418522.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P16688
    Conserved Domains (1) summary
    COG3627
    Location:1 → 277
    PhnJ; Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase [Inorganic ion transport and metabolism]
Nucleotide Protein
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