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soxS DNA-binding transcriptional dual regulator SoxS [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948567, updated on 3-Dec-2024
Official Symbol
soxS
Official Full Name
DNA-binding transcriptional dual regulator SoxS
Primary source
ECOCYC:EG10958
Locus tag
b4062
See related
ASAP:ABE-0013311
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK4054
Summary
Induces sox regulon when superoxide levels increase. [More information is available at EcoGene: EG10958]. SoxS belongs to the AraC/XylS family. [More information is available at EcoCyc: EG10958].
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Sequence:
NC_000913.3 (4277060..4277383, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein YjcB Neighboring gene c-di-GMP phosphodiesterase PdeC Neighboring gene DNA-binding transcriptional dual regulator SoxR Neighboring gene ncRNA Neighboring gene guanine/hypoxanthine transporter GhxP

Genomic Sequence:
NC_000913.3

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
Products Interactant Other Gene Complex Source Pubs Description

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
enables bacterial-type RNA polymerase holo enzyme binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables bacterial-type RNA polymerase holo enzyme binding IDA
Inferred from Direct Assay
more info
PubMed 
enables cis-regulatory region sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within regulation of DNA-templated transcription IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
 
Preferred Names
DNA-binding transcriptional dual regulator SoxS

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4277060..4277383 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418486.1 DNA-binding transcriptional dual regulator SoxS [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418486.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A5B9AQW4
    Conserved Domains (1) summary
    PRK10219
    Location:1107
    PRK10219; superoxide response transcriptional regulator SoxS