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yihL putative DNA-binding transcriptional regulator YihL [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948368, updated on 19-Sep-2024

Summary

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Official Symbol
yihL
Official Full Name
putative DNA-binding transcriptional regulator YihL
Primary source
ECOCYC:EG11838
Locus tag
b3872
See related
ASAP:ABE-0012651
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3865
Summary
The YihL putative transcriptional regulator belongs to the GntR family . [More information is available at EcoCyc: EG11838].
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Genomic context

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Sequence:
NC_000913.3 (4060447..4061157)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene glutamine synthetase Neighboring gene 50S ribosomal subunit assembly factor BipA Neighboring gene putative TIM barrel domain-containing protein YihM Neighboring gene putative transporter YihN

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of transcription factors and the gene regulatory network in Escherichia coli. Madan Babu M, et al. Nucleic Acids Res, 2003 Feb 15. PMID 12582243, Free PMC Article
  2. The Universal Protein Resource (UniProt). Bairoch A, et al. Nucleic Acids Res, 2005 Jan 1. PMID 15608167, Free PMC Article
  3. Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes. Plunkett G 3rd, et al. Nucleic Acids Res, 1993 Jul 25. PMID 8346018, Free PMC Article
  4. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
  5. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative DNA-binding transcriptional regulator YihL

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4060447..4061157
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418308.1 putative DNA-binding transcriptional regulator YihL [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418308.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8S7F8C3
    Conserved Domains (1) summary
    COG2188
    Location:12 → 236
    MngR; DNA-binding transcriptional regulator, GntR family [Transcription]
Nucleotide Protein
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