U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

rbsD [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948267, updated on 24-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
rbsD
Primary source
ASAP:ABE-0012256
Locus tag
b3748
See related
ECOCYC:EG10817
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3742; rbsP
Summary
RbsD is a ribose pyranase; it binds specifically to the -furan and -pyran forms of ribose and increases the exchange rate between the two forms . [More information is available at EcoCyc: EG10817].
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Sequence:
NC_000913.3 (3933351..3933770)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein ViaA Neighboring gene regulatory ATPase RavA Neighboring gene K(+):H(+) symporter Kup Neighboring gene ribose ABC transporter ATP binding subunit Neighboring gene ribose ABC transporter membrane subunit

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The role of Lys2-Cl(-) -Lys2 salt linkages in oligomeric intermediates of RbsD protein in Escherichia coli. Zheng J, et al. J Basic Microbiol, 2020 Feb. PMID 31588591
  2. Disassembly intermediates of RbsD protein remain oligomeric despite the loss of an intact secondary structure. Feng Y, et al. Sci China C Life Sci, 2009 Nov. PMID 19937196
  3. A mutated PtsG, the glucose transporter, allows uptake of D-ribose. Oh H, et al. J Biol Chem, 1999 May 14. PMID 10318813
  4. Ribose utilization with an excess of mutarotase causes cell death due to accumulation of methylglyoxal. Kim I, et al. J Bacteriol, 2004 Nov. PMID 15489434, Free PMC Article
  5. A role of RnlA in the RNase LS activity from Escherichia coli. Otsuka Y, et al. Genes Genet Syst, 2007 Aug. PMID 17895580

See all (19) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The role of Lys2-Cl(-) -Lys2 salt linkages in oligomeric intermediates of RbsD protein in Escherichia coli.
    Title: The role of Lys2-Cl(-) -Lys2 salt linkages in oligomeric intermediates of RbsD protein in Escherichia coli.
  2. These novel observations strongly suggest that the assembly of oligomeric proteins such as RbsD may occur before the completion of subunit folding.
    Title: Disassembly intermediates of RbsD protein remain oligomeric despite the loss of an intact secondary structure.
  3. rbsD was found to mainly exist as decamers with a small portion of apparently larger oligomeric forms, both of which are able to refold/reassemble effectively in a spontaneous way after being completely unfolded
    Title: Stepwise disassembly and apparent nonstepwise reassembly for the oligomeric RbsD protein.
Submit: New GeneRIF Correction

Pathways from PubChem

Go to the top of the page

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables D-ribose pyranase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables D-ribose pyranase activity IEA
Inferred from Electronic Annotation
more info
  
enables identical protein binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables intramolecular lyase activity IEA
Inferred from Electronic Annotation
more info
  
enables intramolecular transferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables isomerase activity IEA
Inferred from Electronic Annotation
more info
  
enables monosaccharide binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in D-ribose catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in D-ribose catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within D-ribose catabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in monosaccharide metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
D-ribose pyranase
NP_418204.2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3933351..3933770
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418204.2 D-ribose pyranase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418204.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A5B9AMH6
    Conserved Domains (1) summary
    PRK11797
    Location:1 → 139
    PRK11797; D-ribose pyranase; Provisional
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.