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xylA xylose isomerase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948141, updated on 6-May-2021

Summary

Gene symbol
xylA
Gene description
xylose isomerase
Primary source
ASAP:ABE-0011639
Locus tag
b3565
See related
ECOCYC:EG11074
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3554
Summary
Xylose isomerase catalyzes the first reaction in the catabolism of D-xylose . [More information is available at EcoCyc: EG11074].
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Genomic context

Sequence:
NC_000913.3 (3729443..3730765, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene PF05360 family inner membrane protein YiaB Neighboring gene xylulokinase Neighboring gene xylose ABC transporter periplasmic binding protein Neighboring gene xylose ABC transporter ATP binding subunit Neighboring gene xylose ABC transporter membrane subunit

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by GO

Function Evidence Code Pubs
enables isomerase activity IEA
Inferred from Electronic Annotation
more info
 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables xylose isomerase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables xylose isomerase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables xylose isomerase activity IEA
Inferred from Electronic Annotation
more info
 
enables xylose isomerase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
Process Evidence Code Pubs
involved_in D-xylose catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within D-xylose catabolic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within D-xylose metabolic process IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
xylose isomerase
NP_418022.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3729443..3730765 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418022.1 xylose isomerase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418022.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P00944
    Conserved Domains (1) summary
    PRK05474
    Location:3439
    PRK05474; xylose isomerase; Provisional
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