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sgbE L-ribulose-5-phosphate 4-epimerase SgbE [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948099, updated on 17-Dec-2024

Summary

Official Symbol
sgbE
Official Full Name
L-ribulose-5-phosphate 4-epimerase SgbE
Primary source
ECOCYC:EG12287
Locus tag
b3583
See related
ASAP:ABE-0011702
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3572; yiaS
Summary
YiaQ is possibly involved in the utilization of L-dehydroascorbate (2,3-diketo-L-gulonate) (Yew, 2002). [More information is available at EcoGene: EG12287]. The sgbE gene encodes a second L-ribulose-5-phosphate 4-epimerase that functions in metabolism of L-lyxose and L-xylulose . [More information is available at EcoCyc: EG12287].
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Genomic context

Sequence:
NC_000913.3 (3750086..3750781)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene 2,3-diketo-L-gulonate:Na(+) symporter - periplasmic binding protein Neighboring gene L-xylulose kinase Neighboring gene 3-keto-L-gulonate-6-phosphate decarboxylase SgbH Neighboring gene putative L-xylulose 5-phosphate 3-epimerase Neighboring gene pseudo Neighboring gene pseudo

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables L-ribulose-phosphate 4-epimerase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables L-ribulose-phosphate 4-epimerase activity IEA
Inferred from Electronic Annotation
more info
 
enables aldehyde-lyase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 
enables isomerase activity IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
enables zinc ion binding ISS
Inferred from Sequence or Structural Similarity
more info
 
Process Evidence Code Pubs
involved_in L-arabinose catabolic process IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within L-lyxose metabolic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in monosaccharide metabolic process IEA
Inferred from Electronic Annotation
more info
 
involved_in pentose catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within pentose catabolic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
L-ribulose-5-phosphate 4-epimerase SgbE
NP_418040.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3750086..3750781
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418040.1 L-ribulose-5-phosphate 4-epimerase SgbE [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418040.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A776QVQ5
    Conserved Domains (1) summary
    PRK12347
    Location:1231
    sgbE; L-ribulose-5-phosphate 4-epimerase; Reviewed