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yiaL [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948094, updated on 24-Aug-2024

Summary

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Official Symbol
yiaL
Primary source
ECOCYC:EG12280
Locus tag
b3576
See related
ASAP:ABE-0011684
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3565
Summary
EbgC is a distant homolog of YiaL, YhcH and YjgK; all four match pfam PF04074. [More information is available at EcoGene: EG12280].
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Genomic context

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Sequence:
NC_000913.3 (3743743..3744210)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene DNA-binding transcriptional repressor PlaR Neighboring gene 2,3-diketo-L-gulonate reductase Neighboring gene 2,3-diketo-L-gulonate:Na(+) symporter - membrane subunit Neighboring gene 2,3-diketo-L-gulonate:Na(+) symporter - membrane subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A rare 920-kilobase chromosomal inversion mediated by IS1 transposition causes constitutive expression of the yiaK-S operon for carbohydrate utilization in Escherichia coli. Badía J, et al. J Biol Chem, 1998 Apr 3. PMID 9525947
  2. Regulation of expression of the yiaKLMNOPQRS operon for carbohydrate utilization in Escherichia coli: involvement of the main transcriptional factors. Ibañez E, et al. J Bacteriol, 2000 Aug. PMID 10913096, Free PMC Article
  3. Crystal structure of the bacterial YhcH protein indicates a role in sialic acid catabolism. Teplyakov A, et al. J Bacteriol, 2005 Aug. PMID 16077096, Free PMC Article
  4. Screen for genes involved in radiation survival of Escherichia coli and construction of a reference database. Sargentini NJ, et al. Mutat Res, 2016 Nov-Dec. PMID 27718375
  5. Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes. Sofia HJ, et al. Nucleic Acids Res, 1994 Jul 11. PMID 8041620, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
acts_upstream_of_or_within response to radiation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
DUF386 domain-containing protein YiaL

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3743743..3744210
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418033.1 DUF386 domain-containing protein YiaL [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418033.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6N8NKC6
    Conserved Domains (1) summary
    TIGR00022
    Location:1 → 141
    TIGR00022; YhcH/YjgK/YiaL family protein
Nucleotide Protein
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