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yiaA PF05360 family inner membrane protein YiaA [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948078, updated on 11-Apr-2024

Summary

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Gene symbol
yiaA
Gene description
PF05360 family inner membrane protein YiaA
Primary source
ASAP:ABE-0011632
Locus tag
b3562
See related
ECOCYC:EG11186
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3551
Summary
yiaB and yiaA are paralogs. [More information is available at EcoGene: EG11186].
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Genomic context

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Sequence:
NC_000913.3 (3726924..3727361, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative lipoprotein YsaB Neighboring gene O-acetyltransferase WecH Neighboring gene PF05360 family inner membrane protein YiaB Neighboring gene xylulokinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cloning and sequencing of the xylose isomerase and xylulose kinase genes of Escherichia coli. Lawlis VB, et al. Appl Environ Microbiol, 1984 Jan. PMID 6320721, Free PMC Article
  2. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
  3. Over 1000 genes are involved in the DNA damage response of Escherichia coli. Khil PP, et al. Mol Microbiol, 2002 Apr. PMID 11967071
  4. Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes. Sofia HJ, et al. Nucleic Acids Res, 1994 Jul 11. PMID 8041620, Free PMC Article
  5. TCDB: the Transporter Classification Database for membrane transport protein analyses and information. Saier MH Jr, et al. Nucleic Acids Res, 2006 Jan 1. PMID 16381841, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
involved_in DNA damage response IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within DNA damage response IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
PF05360 family inner membrane protein YiaA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3726924..3727361 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418019.4 PF05360 family inner membrane protein YiaA [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418019.4

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0H3JJ44, A0A1X3IV13, A0A1X3JBN6, A0A8E0FJG6, A0A979GIM6, C3SN52, D6IFE1, F4TM11, F4VKL5
    Conserved Domains (1) summary
    PRK11383
    Location:1 → 145
    PRK11383; YiaB family inner membrane protein
Nucleotide Protein
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