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dppD dipeptide ABC transporter ATP binding subunit DppD [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948065, updated on 19-Nov-2025
Official Symbol
dppD
Official Full Name
dipeptide ABC transporter ATP binding subunit DppD
Primary source
ECOCYC:EG12627
Locus tag
b3541
See related
ASAP:ABE-0011566
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3528
Summary
Escherichia coli does not normally use exogeneous heme, but heme can be utilized if a foreign OM heme receptor is expressed in Escherichia coli (Letoffe, 2006). [More information is available at EcoGene: EG12627]. DppD is an ATP-binding component of the dipeptide ABC transporter. [More information is available at EcoCyc: EG12627].
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Sequence:
NC_000913.3 (3702865..3703848, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene putative transporter YhjV Neighboring gene dipeptide ABC transporter ATP binding subunit DppF Neighboring gene dipeptide ABC transporter membrane subunit DppC Neighboring gene dipeptide ABC transporter membrane subunit DppB

Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Monitoring Fe-S cluster occupancy across the E. coli proteome using chemoproteomics. Bak DW, et al. Nat Chem Biol, 2023 Mar. PMID 36635565, Free PMC Article
  2. Direct determination of the properties of peptide transport systems in Escherichia coli, using a fluorescent-labeling procedure. Payne JW, et al. J Bacteriol, 1979 Jan. PMID 368023, Free PMC Article
  3. The periplasmic dipeptide permease system transports 5-aminolevulinic acid in Escherichia coli. Verkamp E, et al. J Bacteriol, 1993 Mar. PMID 8444807, Free PMC Article
  4. Crystallization and preliminary X-ray analysis of the periplasmic dipeptide binding protein from Escherichia coli. Dunten PW, et al. J Mol Biol, 1993 May 5. PMID 8496961
  5. 2 A resolution structure of DppA, a periplasmic dipeptide transport/chemosensory receptor. Nickitenko AV, et al. Biochemistry, 1995 Dec 26. PMID 8527431

See all (32) citations in PubMed

GeneRIFs: Gene References Into Functions

Products Interactant Other Gene Complex Source Pubs Description

Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables 4 iron, 4 sulfur cluster binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP binding ISM
Inferred from Sequence Model
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables dipeptide transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables dipeptide transmembrane transporter activity RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
enables heme transmembrane transporter activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in dipeptide transmembrane transport RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
involved_in dipeptide transport NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in heme transmembrane transport NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in peptide transport IEA
Inferred from Electronic Annotation
more info
  
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
  
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
Non-traceable Author Statement
more info
 PubMed 
part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in membrane NAS
Non-traceable Author Statement
more info
 PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
Preferred Names
dipeptide ABC transporter ATP binding subunit DppD
NP_417998.1

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3702865..3703848 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417998.1 dipeptide ABC transporter ATP binding subunit DppD

    See identical proteins and their annotated locations for NP_417998.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A895NNU3
    Conserved Domains (1) summary
    PRK11022
    Location:1 → 327
    dppD; dipeptide transporter ATP-binding subunit; Provisional
Nucleotide Protein
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