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rsmJ [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948005, updated on 11-Sep-2024

Summary

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Official Symbol
rsmJ
Primary source
ECOCYC:EG12233
Locus tag
b3497
See related
ASAP:ABE-0011419
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3482; yhiQ
Summary
In Salmonella, yhiQ is the second gene in prlC operon and is in the heat shock regulon. [More information is available at EcoGene: EG12233]. The opdA-yhiQ operon of Salmonella enterica serovar Typhimurium is regulated by heat shock . [More information is available at EcoCyc: EG12233].
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Genomic context

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Sequence:
NC_000913.3 (3642380..3643132, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein YriA Neighboring gene protein YriB Neighboring gene dipeptide/tripeptide:H(+) symporter DtpB Neighboring gene oligopeptidase A Neighboring gene 23S rRNA m(6)A2030 methyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. YhiQ is RsmJ, the methyltransferase responsible for methylation of G1516 in 16S rRNA of E. coli. Basturea GN, et al. J Mol Biol, 2012 Jan 6. PMID 22079366, Free PMC Article
  2. The global transcriptional response of Escherichia coli to induced sigma 32 protein involves sigma 32 regulon activation followed by inactivation and degradation of sigma 32 in vivo. Zhao K, et al. J Biol Chem, 2005 May 6. PMID 15757896
  3. Regulon and promoter analysis of the E. coli heat-shock factor, sigma32, reveals a multifaceted cellular response to heat stress. Nonaka G, et al. Genes Dev, 2006 Jul 1. PMID 16818608, Free PMC Article
  4. opdA, a Salmonella enterica serovar Typhimurium gene encoding a protease, is part of an operon regulated by heat shock. Conlin CA, et al. J Bacteriol, 2000 Jan. PMID 10629202, Free PMC Article
  5. Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes. Sofia HJ, et al. Nucleic Acids Res, 1994 Jul 11. PMID 8041620, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables 16S rRNA (guanine(1516)-N(2))-methyltransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables rRNA (guanine-N2-)-methyltransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables rRNA (guanine-N2-)-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in methylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within rRNA base methylation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in rRNA methylation IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in rRNA methylation IEA
Inferred from Electronic Annotation
more info
  
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
16S rRNA m(2)G1516 methyltransferase
NP_417954.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3642380..3643132 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417954.1 16S rRNA m(2)G1516 methyltransferase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417954.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2X1IU79
    Conserved Domains (1) summary
    PRK10742
    Location:1 → 250
    PRK10742; 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ
Nucleotide Protein
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