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nikD Ni(2(+)) ABC transporter ATP binding subunit NikD [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947989, updated on 10-Oct-2019

Summary

Gene symbol
nikD
Gene description
Ni(2(+)) ABC transporter ATP binding subunit NikD
Primary source
EcoGene:EG12078
Locus tag
b3479
See related
ASAP:ABE-0011360; ECOCYC:EG12078
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3463; hydC; hydD
Summary
Mutants display nickel-remediated formate hydrogen-lyase, hydrogenase, and hydrogenase-related fumarase defects. [More information is available at EcoGene: EG12078]. The NikABCDE ATP-dependent nickel (II) uptake system is a member of the ATP-Binding Cassette (ABC) Superfamily of transporters . [More information is available at EcoCyc: EG12078].

Genomic context

Sequence:
NC_000913.3 (3617015..3617779)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene Ni(2(+)) ABC transporter periplasmic binding protein Neighboring gene Ni(2(+)) ABC transporter membrane subunit NikB Neighboring gene Ni(2(+)) ABC transporter membrane subunit NikC Neighboring gene Ni(2(+)) ABC transporter ATP binding subunit NikE Neighboring gene DNA-binding transcriptional repressor NikR Neighboring gene rhs element protein RhsB Neighboring gene PF15631 family protein YhhH

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by GO

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
ATP binding ISM
Inferred from Sequence Model
more info
PubMed 
ATPase activity IEA
Inferred from Electronic Annotation
more info
 
hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
nickel cation binding IEA
Inferred from Electronic Annotation
more info
 
nickel-transporting ATPase activity IEA
Inferred from Electronic Annotation
more info
 
nickel-transporting ATPase activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
oligopeptide transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
cation transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
divalent inorganic cation transport IEA
Inferred from Electronic Annotation
more info
 
ion transport IEA
Inferred from Electronic Annotation
more info
 
nickel cation transmembrane transport IMP
Inferred from Mutant Phenotype
more info
PubMed 
nickel cation transport IEA
Inferred from Electronic Annotation
more info
 
oligopeptide transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Ni(2(+)) ABC transporter ATP binding subunit NikD
NP_417936.1

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3617015..3617779
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417936.1 Ni(2(+)) ABC transporter ATP binding subunit NikD [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417936.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P33593
    Conserved Domains (1) summary
    PRK10418
    Location:1254
    nikD; nickel transporter ATP-binding protein NikD; Provisional
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