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nikD Ni(2(+)) ABC transporter ATP binding subunit NikD [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947989, updated on 11-Oct-2018

Summary

Gene symbol
nikD
Gene description
Ni(2(+)) ABC transporter ATP binding subunit NikD
Primary source
EcoGene:EG12078
Locus tag
b3479
See related
ASAP:ABE-0011360; ECOCYC:EG12078
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3463; hydC; hydD
Summary
Mutants display nickel-remediated formate hydrogen-lyase, hydrogenase, and hydrogenase-related fumarase defects. [More information is available at EcoGene: EG12078]. The NikABCDE ATP-dependent nickel (II) uptake system is a member of the ATP-Binding Cassette (ABC) Superfamily of transporters . [More information is available at EcoCyc: EG12078].

Genomic context

Sequence:
NC_000913.3 (3617015..3617779)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene Ni(2(+)) ABC transporter periplasmic binding protein Neighboring gene Ni(2(+)) ABC transporter membrane subunit NikB Neighboring gene Ni(2(+)) ABC transporter membrane subunit NikC Neighboring gene Ni(2(+)) ABC transporter ATP binding subunit NikE Neighboring gene DNA-binding transcriptional repressor NikR Neighboring gene rhs element protein RhsB Neighboring gene PF15631 family protein YhhH

Pathways from BioSystems

  • ABC transporters, organism-specific biosystem (from KEGG)
    ABC transporters, organism-specific biosystemThe ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of ...
  • ABC transporters, conserved biosystem (from KEGG)
    ABC transporters, conserved biosystemThe ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of ...
  • Nickel transport system, organism-specific biosystem (from KEGG)
    Nickel transport system, organism-specific biosystemStructural complex; Environmental information processing; Peptide and nickel transport system
  • Nickel transport system, conserved biosystem (from KEGG)
    Nickel transport system, conserved biosystemStructural complex; Environmental information processing; Peptide and nickel transport system

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by GO

Function Evidence Code Pubs
ATP binding ISM
Inferred from Sequence Model
more info
PubMed 
nickel-transporting ATPase activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Process Evidence Code Pubs
nickel cation transmembrane transport IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 

General protein information

Preferred Names
Ni(2(+)) ABC transporter ATP binding subunit NikD
NP_417936.1

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3617015..3617779
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417936.1 Ni(2(+)) ABC transporter ATP binding subunit NikD [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417936.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P33593
    Conserved Domains (1) summary
    PRK10418
    Location:1254
    nikD; nickel transporter ATP-binding protein NikD; Provisional
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