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rtcR [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947928, updated on 24-Aug-2024

Summary

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Official Symbol
rtcR
Primary source
ECOCYC:EG12356
Locus tag
b3422
See related
ASAP:ABE-0011174
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3408; yhgB
Summary
RtcR , "RNA terminal phosphate cyclase regulator," regulates the expression of genes involved in the ATP-dependent conversion of a 3'-phosphate at the end of RNA to 2',3'-cyclic phosphodiester . [More information is available at EcoCyc: EG12356].
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Genomic context

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Sequence:
NC_000913.3 (3558268..3559866)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene RNA 3'-terminal phosphate cyclase Neighboring gene RNA-splicing ligase Neighboring gene pseudo Neighboring gene rhomboid protease GlpG Neighboring gene thiosulfate sulfurtransferase GlpE

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large scale bacterial gene discovery by similarity search. Robison K, et al. Nat Genet, 1994 Jun. PMID 7920643
  2. Nucleotide sequence of the glpR gene encoding the repressor for the glycerol-3-phosphate regulon of Escherichia coli K12. Choi YL, et al. Nucleic Acids Res, 1988 Aug 11. PMID 3045764, Free PMC Article
  3. Characterization of the Escherichia coli RNA 3'-terminal phosphate cyclase and its sigma54-regulated operon. Genschik P, et al. J Biol Chem, 1998 Sep 25. PMID 9738023
  4. Intrinsic and extrinsic approaches for detecting genes in a bacterial genome. Borodovsky M, et al. Nucleic Acids Res, 1994 Nov 11. PMID 7984428, Free PMC Article
  5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphorelay signal transduction system IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within positive regulation of DNA-templated transcription IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DNA-binding transcriptional activator RtcR

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3558268..3559866
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417880.1 DNA-binding transcriptional activator RtcR [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417880.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A1V2GIB7
    Conserved Domains (1) summary
    COG4650
    Location:1 → 531
    RtcR; Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms]
Nucleotide Protein
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