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nirD [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947881, updated on 11-Sep-2024

Summary

Official Symbol
nirD
Primary source
ECOCYC:EG10655
Locus tag
b3366
See related
ASAP:ABE-0011005
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3354
Summary
The nirD gene encodes the small subunit of the nitrite reductase. [More information is available at EcoCyc: EG10655].
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Genomic context

Sequence:
NC_000913.3 (3496551..3496877)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis-trans isomerase A Neighboring gene putative transporter TsgA Neighboring gene nitrite reductase (NADH) large subunit Neighboring gene nitrite transporter NirC Neighboring gene siroheme synthase

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables 2 iron, 2 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 
contributes_to nitrite reductase NADH activity IDA
Inferred from Direct Assay
more info
PubMed 
enables nitrite reductase NADH activity IEA
Inferred from Electronic Annotation
more info
 
contributes_to nitrite reductase NADH activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in nitrate assimilation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
part_of nitrite reductase complex [NAD(P)H] IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of nitrite reductase complex [NAD(P)H] IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
nitrite reductase (NADH) small subunit
NP_417825.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3496551..3496877
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417825.1 nitrite reductase (NADH) small subunit [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417825.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8S0FE84, A0A8S7CT45
    Conserved Domains (1) summary
    PRK09511
    Location:1108
    nirD; nitrite reductase small subunit NirD