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nirB [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947868, updated on 11-Sep-2024

Summary

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Official Symbol
nirB
Primary source
ECOCYC:EG10653
Locus tag
b3365
See related
ASAP:ABE-0011003
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3353
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Genomic context

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Sequence:
NC_000913.3 (3494011..3496554)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis-trans isomerase A Neighboring gene putative transporter TsgA Neighboring gene nitrite reductase (NADH) small subunit Neighboring gene nitrite transporter NirC Neighboring gene siroheme synthase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The role of the NADH-dependent nitrite reductase, Nir, from Escherichia coli in fermentative ammonification. Wang X, et al. Arch Microbiol, 2019 May. PMID 30406295
  2. Regulation by nucleoid-associated proteins at the Escherichia coli nir operon promoter. Browning DF, et al. J Bacteriol, 2008 Nov. PMID 18757534, Free PMC Article
  3. Clustering as a Means To Control Nitrate Respiration Efficiency and Toxicity in Escherichia coli. Bulot S, et al. mBio, 2019 Oct 22. PMID 31641084, Free PMC Article
  4. Electron-spin-resonance studies of the NADH-dependent nitrite reductase from Escherichia coli K12. Cammack R, et al. Biochem J, 1982 Nov 1. PMID 6297458, Free PMC Article
  5. The steady-state kinetics of the NADH-dependent nitrite reductase from Escherichia coli K 12. Nitrite and hydroxylamine reduction. Jackson RH, et al. Biochem J, 1981 Oct 1. PMID 6279095, Free PMC Article

See all (32) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables 2 iron, 2 sulfur cluster binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables 4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
  
enables NADP binding IEA
Inferred from Electronic Annotation
more info
  
enables flavin adenine dinucleotide binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
  
enables heme binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables heme binding IEA
Inferred from Electronic Annotation
more info
  
enables iron-sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables nitrite reductase NADH activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables nitrite reductase NADH activity IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in NADH oxidation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in fermentation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in nitrate assimilation IEA
Inferred from Electronic Annotation
more info
  
involved_in nitrate assimilation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of nitrite reductase complex [NAD(P)H] IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
nitrite reductase (NADH) large subunit
NP_417824.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3494011..3496554
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417824.1 nitrite reductase (NADH) large subunit [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417824.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376FVP2, A0A8S7BDP9, A0A8S7I281, A0A8S7MUN5
    Conserved Domains (1) summary
    PRK14989
    Location:1 → 847
    PRK14989; nitrite reductase subunit NirD; Provisional
Nucleotide Protein
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