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gspF [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947829, updated on 24-Aug-2024

Summary

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Official Symbol
gspF
Primary source
ECOCYC:G7705
Locus tag
b3327
See related
ASAP:ABE-0010883
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3314; hofF; hopF
Summary
A divergon is a regulon comprised of two adjacent divergent operons or genes. [More information is available at EcoGene: EG12885]. In Escherichia coli, gspF is a member of an operon of genes (gspC-O) which are not normally expressed but are homologous to those encoding the secreton, or type II secretion machinery in Klebsiella oxytoca and Aeromonase hydrophila, among others . [More information is available at EcoCyc: G7705].
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Genomic context

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Sequence:
NC_000913.3 (3459817..3461013)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene Type II secretion system protein GspA Neighboring gene Type II secretion system protein GspC Neighboring gene Type II secretion system protein GspD Neighboring gene Type II secretion system protein GspE Neighboring gene Type II secretion system protein GspG Neighboring gene Type II secretion system protein GspH Neighboring gene Type II secretion system protein GspI

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of the hopG gene, a component of Escherichia coli K-12 type II export system, and its conservation among different pathogenic Escherichia coli and Shigella isolates. Stojiljkovic I, et al. J Bacteriol, 1995 Apr. PMID 7896718, Free PMC Article
  2. Type IV-like pili formed by the type II secreton: specificity, composition, bundling, polar localization, and surface presentation of peptides. Vignon G, et al. J Bacteriol, 2003 Jun. PMID 12754241, Free PMC Article
  3. Involvement of the twin-arginine translocation system in protein secretion via the type II pathway. Voulhoux R, et al. EMBO J, 2001 Dec 3. PMID 11726509, Free PMC Article
  4. Protein secretion in Escherichia coli K-12: dead or alive? Pugsley AP, et al. Cell Mol Life Sci, 1998 Apr. PMID 9614971, Free PMC Article
  5. The cryptic general secretory pathway (gsp) operon of Escherichia coli K-12 encodes functional proteins. Francetic O, et al. J Bacteriol, 1996 Jun. PMID 8655552, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein secretion by the type II secretion system IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein secretion by the type II secretion system IEA
Inferred from Electronic Annotation
more info
  
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
part_of type II protein secretion system complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Type II secretion system protein GspF

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3459817..3461013
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417786.1 Type II secretion system protein GspF [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417786.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6L7C5W4
    Conserved Domains (1) summary
    TIGR02120
    Location:3 → 397
    GspF; type II secretion system protein F
Nucleotide Protein
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