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rpsM 30S ribosomal subunit protein S13 [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947791, updated on 19-Sep-2024

Summary

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Official Symbol
rpsM
Official Full Name
30S ribosomal subunit protein S13
Primary source
ECOCYC:EG10912
Locus tag
b3298
See related
ASAP:ABE-0010809
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3285
Summary
rpsM can be deleted, but null mutants grow slowly and express kanamycin resistance weakly (Bubunenko, 2007), which may explain why a deletion was not isolated by Baba (2006), leading to its misclassification as an essential gene. [More information is available at EcoGene: EG10912]. The S13 protein is a component of the 30S subunit of the ribosome, playing a key role in subunit association and the fidelity of translocation. [More information is available at EcoCyc: EG10912].
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Genomic context

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Sequence:
NC_000913.3 (3442115..3442471, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene 30S ribosomal subunit protein S4 Neighboring gene 30S ribosomal subunit protein S11 Neighboring gene 50S ribosomal subunit protein L36 Neighboring gene Sec translocon subunit SecY

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Directed hydroxyl radical probing of the rRNA neighborhood of ribosomal protein S13 using tethered Fe(II). Heilek GM, et al. RNA, 1996 Jun. PMID 8718688, Free PMC Article
  2. Antisuppression by a mutation in rpsM(S13) giving a shortened ribosomal protein S13. Faxén M, et al. Biochim Biophys Acta, 1994 May 17. PMID 8193163
  3. Growth-rate-dependent regulation of ribosome synthesis in E. coli: expression of the lacZ and galK genes fused to ribosomal promoters. Miura A, et al. Cell, 1981 Sep. PMID 6793240
  4. Primary structure of protein S13 from the small subunit of escherichia coli ribosomes. Lindemann H, et al. Hoppe Seylers Z Physiol Chem, 1977 Jul. PMID 330375
  5. Creating ribosomes with an all-RNA 30S subunit P site. Hoang L, et al. Proc Natl Acad Sci U S A, 2004 Aug 24. PMID 15308780, Free PMC Article

See all (51) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. N-terminus verified by Edman degradation on mature peptide
    Title: Primary structure of protein S13 from the small subunit of escherichia coli ribosomes.
  2. results link S13 to the 3' major domain family of proteins, and the S7 assembly branch, placing S13 in a new location in the 30S subunit assembly map
    Title: Assembly of the 30S ribosomal subunit: positioning ribosomal protein S13 in the S7 assembly branch.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables rRNA binding IEA
Inferred from Electronic Annotation
more info
  
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cytoplasmic translation NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
part_of cytosolic small ribosomal subunit IDA
Inferred from Direct Assay
more info
 PubMed 
part_of cytosolic small ribosomal subunit IPI
Inferred from Physical Interaction
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  
part_of small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
30S ribosomal subunit protein S13

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3442115..3442471 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417757.1 30S ribosomal subunit protein S13 [Escherichia coli str. K-12 substr. MG1655]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6L7C9R2
    Conserved Domains (1) summary
    PRK05179
    Location:1 → 118
    rpsM; 30S ribosomal protein S13; Validated
Nucleotide Protein
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