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rimP [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947680, updated on 11-Sep-2024

Summary

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Official Symbol
rimP
Primary source
ECOCYC:EG11179
Locus tag
b3170
See related
ASAP:ABE-0010417
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3159; yhbC
Summary
RimP is associated with free 30S subunits, but not 50S or mature ribosomes (Nord, 2009). [More information is available at EcoGene: EG11179]. Expression of yhbC is decreased in a recombinant xylitol-producing strain; introduction of a yhbC deletion into that strain increases production of xylitol. yhbC deletion in a wild type background results in better growth during early log phase. [More information is available at EcoCyc: EG11179].
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Genomic context

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Sequence:
NC_000913.3 (3317554..3318006, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene translation initiation factor IF-2beta' Neighboring gene transcription termination/antitermination protein NusA Neighboring gene tRNA-Met Neighboring gene argininosuccinate synthetase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Improvement of NADPH-dependent bioconversion by transcriptome-based molecular breeding. Hibi M, et al. Appl Environ Microbiol, 2007 Dec. PMID 17921263, Free PMC Article
  2. The nucleotide sequence of the cloned nusA gene and its flanking region of Escherichia coli. Ishii S, et al. Nucleic Acids Res, 1984 Apr 11. PMID 6326058, Free PMC Article
  3. Cleavage by RNase III in the transcripts of the met Y-nus-A-infB operon of Escherichia coli releases the tRNA and initiates the decay of the downstream mRNA. Régnier P, et al. J Mol Biol, 1989 Nov 20. PMID 2481042
  4. RNase III cleavages in non-coding leaders of Escherichia coli transcripts control mRNA stability and genetic expression. Régnier P, et al. Biochimie, 1990 Nov. PMID 2085545
  5. In vivo evidence that the nusA and infB genes of E. coli are part of the same multi-gene operon which encodes at least four proteins. Nakamura Y, et al. EMBO J, 1985 Feb. PMID 2990900, Free PMC Article

See all (18) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in ribosomal small subunit assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within ribosomal small subunit assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in ribosomal small subunit biogenesis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within ribosomal small subunit biogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
  
involved_in translation IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within translation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
ribosome maturation factor RimP

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3317554..3318006 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417639.6 ribosome maturation factor RimP [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417639.6

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A780RQS5
    Conserved Domains (1) summary
    cl00259
    Location:1 → 150
    Sm_like; Sm and related proteins
Nucleotide Protein
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