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agaD [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947649, updated on 11-Sep-2024

Summary

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Official Symbol
agaD
Primary source
ECOCYC:G7635
Locus tag
b3140
See related
ASAP:ABE-0010314
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3128; yraF
Summary
AgaD is the Enzyme IID domain of a predicted N-acetylgalactosamine-transporting PEP-dependent phosphotransferase system. [More information is available at EcoCyc: G7635].
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Genomic context

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Sequence:
NC_000913.3 (3285478..3286269)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene tagatose-1,6-bisphosphate aldolase 1 Neighboring gene galactosamine-specific PTS enzyme IIB component Neighboring gene galactosamine-specific PTS enzyme IIC component Neighboring gene putative deaminase AgaI Neighboring gene putative fimbrial protein YraH

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Application of AgaR repressor and dominant repressor variants for verification of a gene cluster involved in N-acetylgalactosamine metabolism in Escherichia coli K-12. Ray WK, et al. Mol Microbiol, 2004 Feb. PMID 14731281
  2. The genes and enzymes for the catabolism of galactitol, D-tagatose, and related carbohydrates in Klebsiella oxytoca M5a1 and other enteric bacteria display convergent evolution. Shakeri-Garakani A, et al. Mol Genet Genomics, 2004 Jul. PMID 15257457
  3. Novel phosphotransferase genes revealed by bacterial genome sequencing: a gene cluster encoding a putative N-acetylgalactosamine metabolic pathway in Escherichia coli. Reizer J, et al. Microbiology (Reading), 1996 Feb. PMID 8932697
  4. TCDB: the Transporter Classification Database for membrane transport protein analyses and information. Saier MH Jr, et al. Nucleic Acids Res, 2006 Jan 1. PMID 16381841, Free PMC Article
  5. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
involved_in phosphoenolpyruvate-dependent sugar phosphotransferase system IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in phosphoenolpyruvate-dependent sugar phosphotransferase system IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
galactosamine-specific PTS enzyme IID component

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3285478..3286269
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417609.1 galactosamine-specific PTS enzyme IID component [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417609.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0H2VB23, Q1R6J7
    Conserved Domains (1) summary
    PRK09855
    Location:1 → 263
    PRK09855; PTS N-acetylgalactosamine transporter subunit IID
Nucleotide Protein
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