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garP galactarate/D-glucarate transporter GarP [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947642, updated on 19-Sep-2024

Summary

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Official Symbol
garP
Official Full Name
galactarate/D-glucarate transporter GarP
Primary source
ECOCYC:EG12760
Locus tag
b3127
See related
ASAP:ABE-0010279
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3115; yhaU
Summary
Major Facilitator Superfamily (MFS). [More information is available at EcoGene: EG12760]. YhaU is an uncharacterised member of the major facilitator superfamily (MFS) of transporters . [More information is available at EcoCyc: EG12760].
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Genomic context

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Sequence:
NC_000913.3 (3273573..3274907, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene tartronate semialdehyde reductase Neighboring gene alpha-dehydro-beta-deoxy-D-glucarate aldolase Neighboring gene GarD Neighboring gene antitoxin PrlF Neighboring gene ribosome-dependent mRNA interferase toxin YhaV

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Processing of the precursor to the catalytic RNA subunit of RNase P from Escherichia coli. Lundberg U, et al. RNA, 1995 May. PMID 7489504, Free PMC Article
  2. Identifying Escherichia coli genes involved in intrinsic multidrug resistance. Duo M, et al. Appl Microbiol Biotechnol, 2008 Dec. PMID 18807027
  3. Microbial drug efflux proteins of the major facilitator superfamily. Saidijam M, et al. Curr Drug Targets, 2006 Jul. PMID 16842212
  4. The major facilitator superfamily. Saier MH Jr, et al. J Mol Microbiol Biotechnol, 1999 Nov. PMID 10943556
  5. A major superfamily of transmembrane facilitators that catalyse uniport, symport and antiport. Marger MD, et al. Trends Biochem Sci, 1993 Jan. PMID 8438231

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables monoatomic anion:monoatomic cation symporter activity RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within D-glucarate metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within D-glucarate metabolic process RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
acts_upstream_of_or_within galactarate metabolic process IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within galactarate metabolic process RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
involved_in monoatomic anion transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane ISM
Inferred from Sequence Model
more info
 PubMed 

General protein information

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Preferred Names
galactarate/D-glucarate transporter GarP

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3273573..3274907 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417596.1 galactarate/D-glucarate transporter GarP [Escherichia coli str. K-12 substr. MG1655]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2H4TUM7
    Conserved Domains (1) summary
    TIGR00893
    Location:25 → 434
    2A0114; D-galactonate transporter
Nucleotide Protein
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