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yhaJ DNA-binding transcriptional activator YhaJ [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947621, updated on 3-Dec-2024

Summary

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Official Symbol
yhaJ
Official Full Name
DNA-binding transcriptional activator YhaJ
Primary source
ECOCYC:G7619
Locus tag
b3105
See related
ASAP:ABE-0010213
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3096
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Genomic context

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Sequence:
NC_000913.3 (3253318..3254214, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative inner membrane protein Neighboring gene putative inner membrane protein Neighboring gene bicupin-related protein Neighboring gene uncharacterized protein YhaL

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The crystal structure of the protein YhaK from Escherichia coli reveals a new subclass of redox sensitive enterobacterial bicupins. Gurmu D, et al. Proteins, 2009 Jan. PMID 18561187
  2. The Highly Conserved Escherichia coli Transcription Factor YhaJ Regulates Aromatic Compound Degradation. Palevsky N, et al. Front Microbiol, 2016. PMID 27713734, Free PMC Article
  3. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
  4. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
  5. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription activator activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables transcription cis-regulatory region binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within positive regulation of DNA-templated transcription initiation IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DNA-binding transcriptional activator YhaJ

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3253318..3254214 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417576.1 DNA-binding transcriptional activator YhaJ [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417576.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6M9WYE3, A0A793N6F3
    Conserved Domains (2) summary
    pfam00126
    Location:9 → 68
    HTH_1; Bacterial regulatory helix-turn-helix protein, lysR family
    cl21456
    Location:99 → 291
    Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
Nucleotide Protein
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