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nfeR DNA-binding transcriptional repressor NfeR [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947584, updated on 30-Jul-2025
Official Symbol
nfeR
Official Full Name
DNA-binding transcriptional repressor NfeR
Primary source
ECOCYC:G7594
Locus tag
b3071
See related
ASAP:ABE-0010084
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3061; yqjI
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Sequence:
NC_000913.3 (3216779..3217402)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene tRNA-Ile Neighboring gene NADPH-dependent Fe(3(+))-chelate reductase Neighboring gene aerotaxis receptor Neighboring gene putrescine aminotransferase

Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Communication between binding sites is required for YqjI regulation of target promoters within the yqjH-yqjI intergenic region. Wang S, et al. J Bacteriol, 2014 Sep. PMID 24982304, Free PMC Article
  2. Fur and the novel regulator YqjI control transcription of the ferric reductase gene yqjH in Escherichia coli. Wang S, et al. J Bacteriol, 2011 Jan. PMID 21097627, Free PMC Article
  3. Thermofluor-based high-throughput stability optimization of proteins for structural studies. Ericsson UB, et al. Anal Biochem, 2006 Oct 15. PMID 16962548
  4. Over 1000 genes are involved in the DNA damage response of Escherichia coli. Khil PP, et al. Mol Microbiol, 2002 Apr. PMID 11967071
  5. Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites. Qin ZS, et al. Nat Biotechnol, 2003 Apr. PMID 12627170

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within DNA damage response IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within negative regulation of DNA-templated transcription IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within negative regulation of DNA-templated transcription IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within positive regulation of DNA-templated transcription IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within positive regulation of DNA-templated transcription IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
Preferred Names
DNA-binding transcriptional repressor NfeR

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3216779..3217402
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417542.1 DNA-binding transcriptional repressor NfeR

    See identical proteins and their annotated locations for NP_417542.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A376FWC2, A0A418GCJ3
    Conserved Domains (1) summary
    COG1695
    Location:60 → 184
    PadR; DNA-binding transcriptional regulator, PadR family [Transcription]
Nucleotide Protein
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