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ttdA L(+)-tartrate dehydratase subunit alpha [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947565, updated on 4-Apr-2024

Summary

Gene symbol
ttdA
Gene description
L(+)-tartrate dehydratase subunit alpha
Primary source
ASAP:ABE-0010050
Locus tag
b3061
See related
ECOCYC:EG11168
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3051; ygjA
Summary
The ttdA gene encodes the alpha subunit of the L-tartrate dehydratase enzyme and is expressed in exponentially growing cells . [More information is available at EcoCyc: EG11168].
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Genomic context

Sequence:
NC_000913.3 (3206463..3207374)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative glycerol-3-phosphate acyltransferase Neighboring gene DNA-binding transcriptional activator Dan Neighboring gene L(+)-tartrate dehydratase subunit beta Neighboring gene L-tartrate:succinate antiporter Neighboring gene N(6)-L-threonylcarbamoyladenine synthase, TsaD subunit

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables 4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 
enables L(+)-tartrate dehydratase activity IEA
Inferred from Electronic Annotation
more info
 
enables iron-sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 
enables lyase activity IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in metabolic process IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within single-species biofilm formation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in tartrate catabolic process NAS
Non-traceable Author Statement
more info
PubMed 
acts_upstream_of_or_within tartrate metabolic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
part_of catalytic complex NAS
Non-traceable Author Statement
more info
PubMed 

General protein information

Preferred Names
L(+)-tartrate dehydratase subunit alpha
NP_417533.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3206463..3207374
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417533.1 L(+)-tartrate dehydratase subunit alpha [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417533.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0B0YNL2
    Conserved Domains (1) summary
    PRK08230
    Location:6303
    PRK08230; tartrate dehydratase subunit alpha; Validated