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ygiM putative signal transduction protein (SH3 domain) [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947555, updated on 17-Dec-2024
Official Symbol
ygiM
Official Full Name
putative signal transduction protein (SH3 domain)
Primary source
ECOCYC:EG12434
Locus tag
b3055
See related
ASAP:ABE-0010028
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ecfG; ECK3045; htrG
Summary
The first 22 aa are predicted to be a type I signal peptide. [More information is available at EcoGene: EG12434]. HtrG is a protein with a possible extracytoplasmic function . [More information is available at EcoCyc: EG12434].
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Sequence:
NC_000913.3 (3201207..3201827)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene fused glutamine synthetase deadenylase/glutamine synthetase adenylyltransferase Neighboring gene inorganic triphosphatase Neighboring gene fused CCA tRNA nucleotidyltransferase/phosphohydrolase Neighboring gene undecaprenyl pyrophosphate phosphatase

Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Systematic analysis of native membrane protein complexes in Escherichia coli. Maddalo G, et al. J Proteome Res, 2011 Apr 1. PMID 21210718
  2. Characterization of the Escherichia coli sigma E regulon. Dartigalongue C, et al. J Biol Chem, 2001 Jun 15. PMID 11274153
  3. Conserved and variable functions of the sigmaE stress response in related genomes. Rhodius VA, et al. PLoS Biol, 2006 Jan. PMID 16336047, Free PMC Article
  4. Comparison of SDS- and methanol-assisted protein solubilization and digestion methods for Escherichia coli membrane proteome analysis by 2-D LC-MS/MS. Zhang N, et al. Proteomics, 2007 Feb. PMID 17309111
  5. Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation. Lu P, et al. Nat Biotechnol, 2007 Jan. PMID 17187058

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
Preferred Names
putative signal transduction protein (SH3 domain)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3201207..3201827
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417527.1 putative signal transduction protein (SH3 domain) [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417527.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    W1WXF6
    Conserved Domains (1) summary
    PRK10884
    Location:1 → 206
    PRK10884; SH3 domain-containing protein; Provisional
Nucleotide Protein
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