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essD DLP12 prophage; putative phage lysis protein [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947545, updated on 6-May-2021

Summary

Gene symbol
essD
Gene description
DLP12 prophage; putative phage lysis protein
Primary source
ASAP:ABE-0001895
Locus tag
b0554
See related
ECOCYC:G6309
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0545; vlyS; ybcR
Summary
EssD is a predicted class II holin of the cryptic lambdoid prophage DLP12. [More information is available at EcoCyc: G6309].
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Genomic context

Sequence:
NC_000913.3 (577398..577613)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene DLP12 prophage; IS5 transposase and trans-activator Neighboring gene pseudo Neighboring gene DLP12 prophage; lysozyme Neighboring gene DLP12 prophage; putative prophage endopeptidase RzpD Neighboring gene DLP12 prophage; putative prophage lysis lipoprotein RzoD Neighboring gene DLP12 prophage; prophage lipoprotein BorD

General gene information

Gene Ontology Provided by GO

Process Evidence Code Pubs
acts_upstream_of_or_within cytolysis IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within viral release from host cell by cytolysis ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Component Evidence Code Pubs
located_in integral component of plasma membrane RCA
inferred from Reviewed Computational Analysis
more info
PubMed 

General protein information

Preferred Names
DLP12 prophage; putative phage lysis protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    577398..577613
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415086.1 DLP12 prophage; putative phage lysis protein [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415086.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P0A9R2
    Conserved Domains (1) summary
    pfam04971
    Location:568
    Phage_holin_2_1; Bacteriophage P21 holin S
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