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rpiA ribose-5-phosphate isomerase A [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947407, updated on 3-Dec-2024

Summary

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Official Symbol
rpiA
Official Full Name
ribose-5-phosphate isomerase A
Primary source
ECOCYC:EG11443
Locus tag
b2914
See related
ASAP:ABE-0009567
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2910; ygfC
Summary
RpiA has similarity to an Edwardsiella ictaluri protein that provokes an immune response in catfish . [More information is available at EcoCyc: EG11443].
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Genomic context

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Sequence:
NC_000913.3 (3058666..3059325, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene toxic peptide IbsC Neighboring gene phosphoglycerate dehydrogenase Neighboring gene pseudo Neighboring gene DNA-binding transcriptional dual regulator ArgP

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The tdh and serA operons of Escherichia coli: mutational analysis of the regulatory elements of leucine-responsive genes. Rex JH, et al. J Bacteriol, 1991 Oct. PMID 1917830, Free PMC Article
  2. Effects of the presence of ColE1 plasmid DNA in Escherichia coli on the host cell metabolism. Wang Z, et al. Microb Cell Fact, 2006 Nov 17. PMID 17112383, Free PMC Article
  3. The regulation of ribose-5-phosphate isomerisation in Escherichia coli K12. Skinner AJ, et al. FEBS Lett, 1971 Jan 30. PMID 11945603
  4. Structure of Escherichia coli ribose-5-phosphate isomerase: a ubiquitous enzyme of the pentose phosphate pathway and the Calvin cycle. Zhang Rg, et al. Structure, 2003 Jan. PMID 12517338, Free PMC Article
  5. Two ribose-5-phosphate isomerases from Escherichia coli K12: partial characterisation of the enzymes and consideration of their possible physiological roles. Essenberg MK, et al. Eur J Biochem, 1975 Jul 1. PMID 1104357

See all (22) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. N-terminus verified by Edman degradation on complete protein
    Title: '98 Escherichia coli SWISS-2DPAGE database update.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables identical protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables isomerase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein homodimerization activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables ribose-5-phosphate isomerase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables ribose-5-phosphate isomerase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables ribose-5-phosphate isomerase activity IEA
Inferred from Electronic Annotation
more info
  
enables ribose-5-phosphate isomerase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
involved_in D-ribose metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within D-ribose metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in pentose-phosphate shunt IEA
Inferred from Electronic Annotation
more info
  
involved_in pentose-phosphate shunt, non-oxidative branch IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in pentose-phosphate shunt, non-oxidative branch IEA
Inferred from Electronic Annotation
more info
  
involved_in small molecule metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
ribose-5-phosphate isomerase A
NP_417389.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3058666..3059325 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417389.1 ribose-5-phosphate isomerase A [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417389.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A7L7EJP5
    Conserved Domains (1) summary
    PRK00702
    Location:1 → 217
    PRK00702; ribose-5-phosphate isomerase RpiA
Nucleotide Protein
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