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glcD glycolate dehydrogenase, putative FAD-linked subunit [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947353, updated on 19-Sep-2024

Summary

Official Symbol
glcD
Official Full Name
glycolate dehydrogenase, putative FAD-linked subunit
Primary source
ECOCYC:G7545
Locus tag
b2979
See related
ASAP:ABE-0009773
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2974; gox; yghM
Summary
Glycolate oxidase catalyzes the first step in the utilization of glycolate as the sole source of carbon . [More information is available at EcoCyc: G7545].
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Genomic context

Sequence:
NC_000913.3 (3126522..3128021, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene glycolate dehydrogenase, putative iron-sulfur subunit Neighboring gene glycolate dehydrogenase, putative FAD-binding subunit Neighboring gene DNA-binding transcriptional dual regulator GlcC Neighboring gene putative DNA-binding transcriptional regulator YghO Neighboring gene IS5 family transposase and trans-activator

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables (S)-2-hydroxy-acid oxidase activity IEA
Inferred from Electronic Annotation
more info
 
enables D-2-hydroxy-acid dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 
enables FAD binding IEA
Inferred from Electronic Annotation
more info
 
enables glycolate dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 
enables glycolate dehydrogenase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within DNA damage response IEP
Inferred from Expression Pattern
more info
PubMed 
acts_upstream_of_or_within glycolate catabolic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
part_of glycolate oxidase complex IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
glycolate dehydrogenase, putative FAD-linked subunit
NP_417453.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3126522..3128021 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417453.1 glycolate dehydrogenase, putative FAD-linked subunit [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417453.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8T5Z9D2
    Conserved Domains (1) summary
    PRK11230
    Location:1499
    PRK11230; glycolate oxidase subunit GlcD; Provisional