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ygeA amino acid racemase YgeA [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947348, updated on 19-Sep-2024

Summary

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Official Symbol
ygeA
Official Full Name
amino acid racemase YgeA
Primary source
ECOCYC:EG11157
Locus tag
b2840
See related
ASAP:ABE-0009315
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2838
Summary
YgeA is predicted to be an amino acid racemase . [More information is available at EcoCyc: EG11157].
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Genomic context

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Sequence:
NC_000913.3 (2979943..2980635, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene DNA-binding transcriptional dual regulator GalR Neighboring gene diaminopimelate decarboxylase Neighboring gene DNA-binding transcriptional dual regulator LysR Neighboring gene arabinose:H(+) symporter Neighboring gene putative 2-keto-3-deoxy-D-gluconate dehydrogenase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Attenuation regulation of amino acid biosynthetic operons in proteobacteria: comparative genomics analysis. Vitreschak AG, et al. FEMS Microbiol Lett, 2004 May 15. PMID 15135544
  2. The cloning, DNA sequence, and overexpression of the gene araE coding for arabinose-proton symport in Escherichia coli K12. Maiden MC, et al. J Biol Chem, 1988 Jun 15. PMID 2836407
  3. Regulation of diaminopimelate decarboxylase synthesis in Escherichia coli. III. Nucleotide sequence and regulation of the lysR gene. Stragier P, et al. J Mol Biol, 1983 Aug 5. PMID 6350602
  4. Identification and characterization of novel broad-spectrum amino acid racemases from Escherichia coli and Bacillus subtilis. Miyamoto T, et al. Amino Acids, 2017 Nov. PMID 28894939
  5. Interaction network containing conserved and essential protein complexes in Escherichia coli. Butland G, et al. Nature, 2005 Feb 3. PMID 15690043

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables amino-acid racemase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables amino-acid racemase activity IEA
Inferred from Electronic Annotation
more info
  
enables isomerase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 

General protein information

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Preferred Names
amino acid racemase YgeA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2979943..2980635 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417317.1 amino acid racemase YgeA [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417317.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A765T533
    Conserved Domains (1) summary
    PRK10200
    Location:1 → 230
    PRK10200; putative racemase; Provisional
Nucleotide Protein
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