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ygiC putative acid--amine ligase YgiC [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947249, updated on 10-Oct-2024

Summary

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Official Symbol
ygiC
Official Full Name
putative acid--amine ligase YgiC
Primary source
ECOCYC:EG11165
Locus tag
b3038
See related
ASAP:ABE-0009971
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3029
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Genomic context

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Sequence:
NC_000913.3 (3180421..3181581)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene outer membrane channel TolC Neighboring gene DUF1190 domain-containing protein YgiB Neighboring gene 4,5-DOPA dioxygenase extradiol Neighboring gene divalent metal ion transporter ZupT

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Escherichia coli YgiC and YjfC Possess Peptide─Spermidine Ligase Activity. Pederick JL, et al. Biochemistry, 2023 Feb 21. PMID 36745518
  2. Nucleotide sequence of a region duplicated in Escherichia coli toc mutants. Yang TP, et al. Biochim Biophys Acta, 1992 Mar 24. PMID 1314093
  3. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Escherichia coli YgiC and YjfC Possess Peptide horizontal line Spermidine Ligase Activity.
    Title: Escherichia coli YgiC and YjfC Possess Peptide─Spermidine Ligase Activity.
Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables ligase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative acid--amine ligase YgiC

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3180421..3181581
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417510.1 putative acid--amine ligase YgiC [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417510.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376RDP2, A0A8T6PXL7, A0AAN3IJ44
    Conserved Domains (1) summary
    COG0754
    Location:1 → 386
    Gsp; Glutathionylspermidine synthase [Amino acid transport and metabolism]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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