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abpA anti-bacteriophage protein [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947110, updated on 3-Dec-2024
Official Symbol
abpA
Official Full Name
anti-bacteriophage protein
Primary source
ECOCYC:G7363
Locus tag
b2628
See related
ASAP:ABE-0008650
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2624; yfjL
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Sequence:
NC_000913.3 (2763537..2765153, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF3987 domain-containing protein YfjI Neighboring gene protein YfjJ Neighboring gene putative helicase YfjK Neighboring gene protein YfjM Neighboring gene RNase LS, toxin of the RnlAB toxin-antitoxin system Neighboring gene antitoxin RnlB

Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. AbpA and AbpB provide anti-phage activity in Escherichia coli. Yasui R, et al. Genes Genet Syst, 2014. PMID 25224971
  2. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
  3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
  5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. AbpA and AbpB target DNA replication of phages to block phage propagation
    Title: AbpA and AbpB provide anti-phage activity in Escherichia coli.
Submit: New GeneRIF Correction

Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables nuclease activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response to virus IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within defense response to virus IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Preferred Names
anti-bacteriophage protein

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2763537..2765153 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417117.1 anti-bacteriophage protein [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417117.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P52127
    Conserved Domains (2) summary
    pfam08878
    Location:294 → 519
    DUF1837; Domain of unknown function (DUF1837)
    pfam14130
    Location:4 → 215
    DUF4297; Domain of unknown function (DUF4297)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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