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yfiR [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947090, updated on 24-Aug-2024

Summary

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Official Symbol
yfiR
Primary source
ASAP:ABE-0008568
Locus tag
b2603
See related
ECOCYC:G7354
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2600
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Genomic context

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Sequence:
NC_000913.3 (2741875..2742393)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene 3-deoxy-7-phosphoheptulonate synthase, Tyr-sensitive Neighboring gene DUF2799 domain-containing lipoprotein YfiL Neighboring gene diguanylate cyclase DgcN Neighboring gene lipoprotein YfiB Neighboring gene 50S ribosomal subunit protein L19

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A comprehensive genetic characterization of bacterial motility. Girgis HS, et al. PLoS Genet, 2007 Sep. PMID 17941710, Free PMC Article
  2. Gene expression patterns and differential input into curli fimbriae regulation of all GGDEF/EAL domain proteins in Escherichia coli. Sommerfeldt N, et al. Microbiology (Reading), 2009 Apr. PMID 19332833
  3. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
acts_upstream_of_or_within bacterial-type flagellum-dependent swarming motility IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in periplasmic space IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DUF4154 domain-containing protein YfiR

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2741875..2742393
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417094.1 DUF4154 domain-containing protein YfiR [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417094.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376M3U6
    Conserved Domains (1) summary
    pfam13689
    Location:32 → 167
    DUF4154; Domain of unknown function (DUF4154)
Nucleotide Protein
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