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yfiE putative LysR-type DNA-binding transcriptional regulator YfiE [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947064, updated on 23-Nov-2023

Summary

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Gene symbol
yfiE
Gene description
putative LysR-type DNA-binding transcriptional regulator YfiE
Primary source
ASAP:ABE-0008483
Locus tag
b2577
See related
ECOCYC:EG11785
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2575
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Genomic context

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Sequence:
NC_000913.3 (2714439..2715320, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene L-aspartate oxidase Neighboring gene tRNA m(6)A37 methyltransferase Neighboring gene ATP-dependent RNA helicase SrmB Neighboring gene cysteine/O-acetylserine exporter EamB Neighboring gene stress-induced alternate pyruvate formate-lyase subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
  2. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
  3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
  5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables transcription cis-regulatory region binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative LysR-type DNA-binding transcriptional regulator YfiE

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2714439..2715320 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417072.4 putative LysR-type DNA-binding transcriptional regulator YfiE [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417072.4

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A7D7HCG8, A0A8S7YNV7
    Conserved Domains (1) summary
    COG0583
    Location:1 → 290
    LysR; DNA-binding transcriptional regulator, LysR family [Transcription]
Nucleotide Protein
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