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csiE [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947009, updated on 11-Sep-2024

Summary

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Official Symbol
csiE
Primary source
ECOCYC:G7329
Locus tag
b2535
See related
ASAP:ABE-0008346
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
csi-16; ECK2532
Summary
Regulation has been described . [More information is available at EcoCyc: G7329].
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Genomic context

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Sequence:
NC_000913.3 (2665435..2666715)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene Nus factor SuhB Neighboring gene putative peptidase Neighboring gene putative 3-phenylpropionate transporter Neighboring gene protein IroK Neighboring gene DNA-binding transcriptional dual regulator HcaR Neighboring gene putative 3-phenylpropionate/cinnamate dioxygenase subunit alpha Neighboring gene putative 3-phenylpropionate/cinnamate dioxygenase subunit beta

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Regulatory characteristics and promoter analysis of csiE, a stationary phase-inducible gene under the control of sigma S and the cAMP-CRP complex in Escherichia coli. Marschall C, et al. Mol Microbiol, 1995 Oct. PMID 8596457
  2. Identification and characterization of stationary phase-inducible genes in Escherichia coli. Weichart D, et al. Mol Microbiol, 1993 Oct. PMID 7934831
  3. Differential ability of sigma(s) and sigma70 of Escherichia coli to utilize promoters containing half or full UP-element sites. Typas A, et al. Mol Microbiol, 2005 Jan. PMID 15612932
  4. The sequence upstream of the -10 consensus sequence modulates the strength and induction time of stationary-phase promoters in Escherichia coli. Miksch G, et al. Appl Microbiol Biotechnol, 2005 Dec. PMID 16088348
  5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
stationary phase-inducible protein CsiE

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2665435..2666715
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417030.2 stationary phase-inducible protein CsiE [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417030.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2X1KHF3
    Conserved Domains (1) summary
    PRK11564
    Location:1 → 426
    PRK11564; stationary phase inducible protein CsiE; Provisional
Nucleotide Protein
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