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intS prophage CPS-53 integrase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946821, updated on 9-Mar-2022

Summary

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Gene symbol
intS
Gene description
prophage CPS-53 integrase
Primary source
ASAP:ABE-0007756
Locus tag
b2349
See related
ECOCYC:G7218
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2343; intC; yfdB
Summary
IntS is the integrase required for both integration and excision of the prophage KpLE1 . [More information is available at EcoCyc: G7218].
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Genomic context

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Sequence:
NC_000913.3 (2466545..2467702)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene inner membrane protein YfdC Neighboring gene tRNA-Arg Neighboring gene putative bactoprenol-linked glucose translocase Neighboring gene bactoprenol glucosyl transferase Neighboring gene serotype-specific glucosyl transferase YfdI

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Regulation of the int gene of bacteriophage lambda: activation by the cII and cIII gene products and the role of the Pi and Pl promoters. Oppenheim A, et al. Mol Gen Genet, 1978 Sep 20. PMID 362165
  2. Protein binding sites involved in the assembly of the KplE1 prophage intasome. Panis G, et al. Virology, 2010 Aug 15. PMID 20494389
  3. Control and regulation of KplE1 prophage site-specific recombination: a new recombination module analyzed. Panis G, et al. J Biol Chem, 2007 Jul 27. PMID 17545146
  4. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
  5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by GO

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables identical protein binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA integration IEA
Inferred from Electronic Annotation
more info
  
involved_in DNA recombination IEA
Inferred from Electronic Annotation
more info
  
involved_in establishment of integrated proviral latency IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within provirus excision IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in viral entry into host cell IEA
Inferred from Electronic Annotation
more info
  
involved_in viral genome integration into host DNA IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
prophage CPS-53 integrase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2466545..2467702
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416850.1 prophage CPS-53 integrase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416850.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P37326
    Conserved Domains (1) summary
    PRK09692
    Location:2 → 380
    PRK09692; integrase; Provisional
Nucleotide Protein
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