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ydbK putative pyruvate-flavodoxin oxidoreductase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946587, updated on 9-Mar-2022

Summary

Gene symbol
ydbK
Gene description
putative pyruvate-flavodoxin oxidoreductase
Primary source
ASAP:ABE-0004613
Locus tag
b1378
See related
ECOCYC:G6701
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1374; pfo
Summary
ydbK is SoxS-regulated in Salmonella. ydbK is a nifJ-like gene, with a probable iron-sulfur center. [More information is available at EcoGene: EG13183]. Based on sequence similarity, YdbK is predicted to be a pyruvate synthase . [More information is available at EcoCyc: G6701].
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Genomic context

Sequence:
NC_000913.3 (1437260..1440784, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene outer membrane porin N Neighboring gene ncRNA Neighboring gene DUF333 domain-containing protein YdbJ Neighboring gene lipoprotein implicated in Novobiocin resistance Neighboring gene D-lactate dehydrogenase

General gene information

Gene Ontology Provided by GO

Function Evidence Code Pubs
enables 4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 
enables iron-sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 
enables oxidoreductase activity, acting on the aldehyde or oxo group of donors IEA
Inferred from Electronic Annotation
more info
 
enables pyruvate-flavodoxin oxidoreductase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables pyruvate-flavodoxin oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 
enables thiamine pyrophosphate binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in electron transport chain IEA
Inferred from Electronic Annotation
more info
 
involved_in response to oxidative stress IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within response to oxidative stress IMP
Inferred from Mutant Phenotype
more info
PubMed 

General protein information

Preferred Names
putative pyruvate-flavodoxin oxidoreductase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1437260..1440784 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415896.1 putative pyruvate-flavodoxin oxidoreductase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415896.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P52647
    Conserved Domains (1) summary
    TIGR02176
    Location:11166
    pyruv_ox_red; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric