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ydhJ putative membrane fusion protein YdhJ [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946499, updated on 20-Feb-2025

Summary

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Official Symbol
ydhJ
Official Full Name
putative membrane fusion protein YdhJ
Primary source
ECOCYC:G6884
Locus tag
b1644
See related
ASAP:ABE-0005501
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1640
Summary
YdhJ has a putative signal anchor. [More information is available at EcoGene: EG13944].
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Genomic context

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Sequence:
NC_000913.3 (1721264..1722121)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene DNA-binding transcriptional dual regulator SlyA Neighboring gene DUF1656 domain-containing protein YdhI Neighboring gene putative transporter YdhK Neighboring gene superoxide dismutase (Cu-Zn)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Systematic characterization of Escherichia coli genes/ORFs affecting biofilm formation. Tenorio E, et al. FEMS Microbiol Lett, 2003 Aug 8. PMID 12900028
  2. Membranome: a database for proteome-wide analysis of single-pass membrane proteins. Lomize AL, et al. Nucleic Acids Res, 2017 Jan 4. PMID 27510400, Free PMC Article
  3. A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map. Aiba H, et al. DNA Res, 1996 Dec 31. PMID 9097039
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in response to toxic substance IEA
Inferred from Electronic Annotation
more info
  
involved_in transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 

General protein information

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Preferred Names
putative membrane fusion protein YdhJ

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1721264..1722121
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416161.4 putative membrane fusion protein YdhJ [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416161.4

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A1X3JFT1
    Conserved Domains (1) summary
    COG1566
    Location:4 → 283
    EmrA; Multidrug resistance efflux pump [Defense mechanisms]
Nucleotide Protein
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