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yobF DUF2527 domain-containing protein YobF [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946338, updated on 3-Dec-2024
Official Symbol
yobF
Official Full Name
DUF2527 domain-containing protein YobF
Primary source
ECOCYC:G7000
Locus tag
b1824
See related
ASAP:ABE-0006072
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1822
Summary
Repressed during biofilm formation. [More information is available at EcoGene: EG14382]. yobF was predicted to be a target of the small RNA OxyS. [More information is available at EcoCyc: G7000].
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Sequence:
NC_000913.3 (1907448..1907591, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene Mn(2(+)) exporter Neighboring gene 23S rRNA m(1)G745 methyltransferase Neighboring gene transcription antiterminator and regulator of mRNA stability CspC Neighboring gene uncharacterized protein YebO Neighboring gene PhoQ kinase inhibitor

Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Target prediction for small, noncoding RNAs in bacteria. Tjaden B, et al. Nucleic Acids Res, 2006. PMID 16717284, Free PMC Article
  2. Global approaches for finding small RNA and small open reading frame functions. Wassarman KM, et al. J Bacteriol, 2010 Jan. PMID 19854892, Free PMC Article
  3. Small RNAs and small proteins involved in resistance to cell envelope stress and acid shock in Escherichia coli: analysis of a bar-coded mutant collection. Hobbs EC, et al. J Bacteriol, 2010 Jan. PMID 19734312, Free PMC Article
  4. Small stress response proteins in Escherichia coli: proteins missed by classical proteomic studies. Hemm MR, et al. J Bacteriol, 2010 Jan. PMID 19734316, Free PMC Article
  5. Gene expression in Escherichia coli biofilms. Ren D, et al. Appl Microbiol Biotechnol, 2004 May. PMID 14727089

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to cell envelope stress IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within cellular response to heat IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within cellular stress response to acid chemical IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Preferred Names
DUF2527 domain-containing protein YobF

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1907448..1907591 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416338.1 DUF2527 domain-containing protein YobF [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416338.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P64508
    Conserved Domains (1) summary
    pfam10736
    Location:1 → 38
    DUF2527; Protein of unknown function (DUF2627)
Nucleotide Protein
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